Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G031460.11

ChromosomeExonStartStopDirection
chr3H1156627636156627632-
chr3H2156628029156627930-
chr3H3156628543156628521-
chr3H4156629026156628707-
chr3H5156629281156629228-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os05g14180.1 +2 2e-49 143 70/79 (89%) protein|OsIAA17 - Auxin-responsive Aux/IAA gene family member, expressed
TAIR PP10 AT4G29080 @ ARAPORT
AT4G29080.1 @ TAIR		 +2 5e-36 109 55/95 (58%) Symbols: PAP2, IAA27 | phytochrome-associated protein 2 | chr4:14323665-14325213 REVERSE LENGTH=305
BRACH PP3 Bradi2g07770.1.p +2 1e-52 153 72/78 (92%) pacid=32771633 transcript=Bradi2g07770.1 locus=Bradi2g07770 ID=Bradi2g07770.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (502 bp)

>HORVU3Hr1G031460.11 502 150831_barley_pseudomolecules
GCGGGCGCGCGTTTTGCACTCGGCTTGATCTATTAGGTTCAGGAGCTTCGAGAGCCGAAC
GAAATGCTGGGTCGGCTCCATTGCCGGTTCTTACTCTCAATTACCGATGCGCAGGGCTCA
GGTGGTGGGATGGCCACCAATCCGCAGCTACCGCAAGAACACGATGGCAACCACCACCAA
CCAGCTGAAGAGCAGCAAGGAGGATTCTGACGCGAAGCAGGGGCAAGAGTTTCTGTATGT
CAAAGTCAGCATGGATGGCGCGCCTTACCTGAGGAAGGTTGACCTCAAGACATACAAGAA
CTATAAGGACCTGTCTCTGGGGCTAGAGAAAATGTTCATTGGCTTCAGCACCGGTGAGGC
TGCTCGGATCCTCGGGCTGGCGAAATTGGTTATTGTGGTAAAGATGGTGTATCTGAGAAC
AGAAAGGATGGTGAATACGTGCTGACCTACGAAGACAAGGACGGAGACTGGATGCTGGTT
GGTGACGTCCCATGGGACTTTT