- Transcript HORVU3Hr1G031460.10
- Transcript IDHORVU3Hr1G031460.10
- Gene IDHORVU3Hr1G031460
Exon Structure of HORVU3Hr1G031460.10
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr3H | 1 | 156627636 | 156627629 | - |
chr3H | 2 | 156628029 | 156627930 | - |
chr3H | 3 | 156628966 | 156628723 | - |
chr3H | 4 | 156629909 | 156629587 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os05g14180.1 | +1 | 1e-59 | 179 | 111/172 (65%) | protein|OsIAA17 - Auxin-responsive Aux/IAA gene family member, expressed |
TAIR PP10 | AT4G29080 @ ARAPORT AT4G29080.1 @ TAIR |
+1 | 1e-36 | 117 | 88/191 (46%) | Symbols: PAP2, IAA27 | phytochrome-associated protein 2 | chr4:14323665-14325213 REVERSE LENGTH=305 |
BRACH PP3 | Bradi2g07770.1.p | +1 | 7e-84 | 249 | 142/162 (88%) | pacid=32771633 transcript=Bradi2g07770.1 locus=Bradi2g07770 ID=Bradi2g07770.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (675 bp)
>HORVU3Hr1G031460.10 675 150831_barley_pseudomolecules NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNccgCGCGGACGACGACCTGAAAGGCACCGAGCTCCGCCTC GGACTTCCCGGCTGCGAGTCGCCGGACCGCCGCCCGGTCGCCGCCACCACCACACTGGAG CTTCTGCCCGCCAAGGGCGCCAAGCGAGGGTTCTCGGACGAGGTCCTGCCGCCTGCGCCG TCTGCCGCCGGCGGGAAAGGCAAGGAGACGTCCGGGGATGAGAAGGACAAGAAGGTCGCC GCACCGCCGCAGCCTGCTGCCAAGGCTCAGGTGGTGGGATGGCCACCAATCCGCAGCTAC CGCAAGAACACGATGGCAACCACCACCAACCAGCTGAAGAGCAGCAAGGAGGATTCTGAC GCGAAGCAGGGGCAAGAGTTTCTGTATGTCAAAGTCAGCATGGATGGCGCGCCTTACCTG AGGAAGGTTGACCTCAAGACATACAAGAACTATAAGGACCTGTCTCTGGGGCTAGAGAAA ATGTTCATTGGCTTCAGCACCGGTGAGGTAAAGATGGTGTATCTGAGAACAGAAAGGATG GTGAATACGTGCTGACCTACGAAGACAAGGACGGAGACTGGATGCTGGTTGGTGACGTCC CATGGGACTTTTGCT