- Transcript HORVU3Hr1G029210.9
- Transcript IDHORVU3Hr1G029210.9
- Gene IDHORVU3Hr1G029210
Barley RTD
Exon Structure of HORVU3Hr1G029210.9
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 133980544 | 133980346 | - |
| chr3H | 2 | 133980745 | 133980629 | - |
| chr3H | 3 | 133980989 | 133980885 | - |
| chr3H | 4 | 133981597 | 133981505 | - |
| chr3H | 5 | 133984485 | 133981692 | - |
| chr3H | 6 | 133984718 | 133984615 | - |
| chr3H | 7 | 133985187 | 133985055 | - |
| chr3H | 8 | 133985370 | 133985247 | - |
| chr3H | 9 | 133985942 | 133985769 | - |
| chr3H | 10 | 133988426 | 133988049 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g11040.1 | +3 | 0.0 | 1396 | 891/1374 (65%) | protein|SCAR-like protein 2, putative, expressed |
| TAIR PP10 | AT2G38440 @ ARAPORT AT2G38440.1 @ TAIR |
+3 | 2e-51 | 199 | 106/219 (48%) | Symbols: ITB1, SCAR2, DIS3, WAVE4, ATSCAR2 | SCAR homolog 2 | chr2:16095550-16100851 FORWARD LENGTH=1399 |
| BRACH PP3 | Bradi2g06610.1.p | +3 | 0.0 | 1510 | 919/1367 (67%) | pacid=32774243 transcript=Bradi2g06610.1 locus=Bradi2g06610 ID=Bradi2g06610.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4221 bp)
>HORVU3Hr1G029210.9 4221 150831_barley_pseudomolecules CGCCACTCGCCTCGGCCGCCCCCTTCCGTGCGGAGGCGGCAACCTGTGACGCCCCAAAGT CGGCGCACCTGCTCCCACTGGGAAAGTAGCCGTTGCGGCGTCGCATTTATAGCGACCGCC AGGCGTCACGATGGCCGCTGCTCGGCGGTGAGGAGGAGCCCGCTCTCGCGCGCTCGGTGG TTGGTGGAGCGGAGATGCCGCTGGTCAGGTTCGAGGTGCGGAATGAGGTCGGGCTGGGCG ACCCCGGGCTGTACGGCGCCGCGGGGGCAGGGAAGCGAGGCGGCGCCGGCGCCGCCGCCG CAGGGGAGGCCGAGCCCAAGGCGCTGCTCGAGGGCGTCGCCGTCGCGGGCCTCGTCGGGA TCCTGCGCCAGCTCGGAGGTCATACCAGATTTGCGGCAGATATTTTTCATGACCTACACG AGCAAGTTATAACTACATCGTCTAGGGGGCGTAAGGTGTTGACTCGAGTACAGAACATTG AAGCAGCACTTCCATCTCTTGAAAAAGCTGTGAAGAATCAGAAGAGCCATATACATTTTG CTTATGTACCAGGTTCTGACTGGCACACACAACTTCAAAATGAGCAAAATCATCTCCTAT CCAGTGATCTGCCTCGGTTTATGATGGATTCCTATGAAGAATGTCGAGACCCACCACGAC TTTACCTTCTCGACAAATTTGATAATGCTGGTGCTGGGGCTTGTTTGAAGAGATATTCTG ATCCATCTTACTTCAAGAAATCATGGGATGTGATGAGAGCAGACAAGACTGCACATCTCC AAAAAGAAAGGAGATCTCATAAAATCAAGAGGAAAGGATCACGCCTAAAAGAACCATATC ATGGACAAGCCACATCCAGGCATAGGAATGGTGAATTGCAGCGAGCACTCACTGCTGTTC AACTCACCAGCAGGCAGTGTGCATCTCCCAGCATGGATGGCCAGAGTTTTTCGGAGCATA GATCTACATCTGATGCAAGATCCAACCCTGACAATATAAGCAGATCTTCTTCATTTAGTT CAAAGGCACGACTGAGTTTTGCAGAACAAGCTTCAGATACAAAGCCTTCTGTAATTCCTC ATGAGAATGGTCATGCCAAGCTGTCAAATATTGATATGCACAAGCTTAATGATGCCTCTT CCCCCGTCTTGCTTAGCGAGACCAGGGAAGATGATCTGGGTGATGATTTGAAGCAAGGTT CCCTGTCAGATGAGATGAATGCTAGGTCACCTTCTGTTGAATGGCATGAAAAGGCTGCAA TTGTCATGACTACAAGTTCTGTCTACTGTGATGATGTTGTCATGGATAGGGCTGAAAATG CAGAAACTAAACATATTAAGCCCGTGCAGCGAGAAGTTGATTATAGGGAGATGCAGACCT TGGAGCAGCAAGGGGCCTTACTTCAGAAGGCAAAGTTGTTATTACTGTCATCAGGCTTAA ACCACCGTGATGAAGTCCCCTGTGAAACAGACAACTACATGGATGCACTTAACACACTTG AATCTGAGACAGAGACTGAAGTTGACTCTCAAACTAAAAAACAAGGGAAGCCAGTACATT CCTTCAATGCTCATGCACCTCAAATAGAGTTGACAGATAATGCCGTTTCACAGCTTCCTG ATTCTTCTCCTGTTGAGTTTCCTGATACAAGTCCAAATTCCAGAATGTTACATACTTTTG AAAGAAGTGCCGATTTCCCCAGTTTGTCAAGTGCAGATGCTCCGGATATTTCACAGCATT CATTGTCAGGTTATACAGATATACATCCTAATGAATGGTCATCTGTTACCACCATCCCTG AGAATAATGCAAATAATGCTGCTGGAGACCCCACTGAAATTTCAGAACCGGCACTGCAAG CATATACACCTACACCACCCAATCAAAGGTGCCCTCGTGCAAATGAGATTCCTGAGAGTA AGGCAGAAGTTATCCCCAGAGATTCTCCTGTGATCTCAAAACCAGAGCTGTCAACCTATG CAGTTTTCCCTCCCAATAAAGAGTCTATTGTCAGTCAGATCCCTGAGAATAGTGTAGAAG GTGTGTCAGAAGATGATACCAATGAAATCACTAGTTGTCTTGTACCGGAACCTTCCATTT CCTTTGCTCCAACTAGTGAGGCGTCTCCTGCAAAAATCTTACCTGGTTATAACACTGGTA ACTCTGTAATTTCGGAAAGGAGTCCTCAGGATTATCCTGGAGAAAATCATCAGGAATTTG GTGGCTGTGGCATGGCTGAAGTGTCTAATTCACAGACCATGCCTTTGAACGAGTCATCAG AGAATGGATCTGCAACCCAACACCTTCCCACACATGCTCCTACTAGTTCCCAACACCTTC CCACACATGCTCCGACTAGTTCTGTAGAATTATCTTCTGTTAAGCTCTGGACAAATGCTG GTCTCTTCGGACTTGAACCGTCTAAACCTCCAGTTGGCATATGTCCAGGTTCTGCAAACC AAAGCTACCCAGAGAATAATCAATCAGCCACAAGAACACCTGATGCAGTTTATAGCCAAA CAAACCGGCCCTCAGATTCTTCCACATATTTCGAGCACAGGGAGCACAGCAATTTGAATG GCAAGCAAGCTTCAATAAGTGAGCTCCTAGAATCTGAAGGTAATGCTGAAATTGGTGCTG AAACATACTCTGGCACTGACTTGGTTGGAAGGAATAACTTGCCCGTGGTGTCTGCATCAA GCTTCTCGAGCATTGCACAAAGATTCCTTGCCAATACACTTCAGAGAAGAACTTCTCCCA AATATAATGATCTTCCTATGTCATCTGGGAGAGTGAATACTGACACAAATGGGTTTGATG AAGCTACTGTAAATTCTACTCTTGCACCAAAGGAAACAGTATTCGAGGCATCTCAGTTTG AGAAGAAAACAGATTATGGCGTGGATGGACTGCCCAAGTCCTCTAGTTGCCATTACTCTG AGAAATCATCTCCGCCACTAGAGCATATGAAAATATCCTTTCACCCCATGAGTGCATCTG AAATGTCGAAATTGAACCTAGATTTTTCTGATGGCAATCTTCATGAAAATGTTGATGATA TGATGTTACCAACATTTCAGTTACTTCCAGGGTCTTCTGTCCCACAGCCTGGCAGTGGTT CTGAATCAGAAGATGACACCTTTGGTAGATCTTATAGTTATTCTTCATATGATGATCTAA GTCCGCGTTTATATTCAAACTCAGAGTTGTGGGATCAAGAAGATGGAATTGGATTCGAGG ATAATGAGCTGTATAATGATTCAAATCAAATAGGATCCTCCACAACGCCTGTCTCTAGCT ATATGGGATTCGAGCAGATGAACTTATCTGGTGAGAAGTCCACTATTTCACTTTCAGATA TTGGAGATAATAACGGACTCGGCTCGTTAGAATCCCATCCTGCTGGAGAACTTCCGAACT TTGACACTTTGATGTCAACAAGTAATCATCAAAATAGAGATGCGCTCATTCCACAAAATC CAATCAATTTATCACCAGTTGTAGATCAGATGCCGCCGCCACCTCCTCTTCCCCCAATGC AGTGGAGGACAATGAGACAAACAACTTCCCTAGAAGAAGAAAGAGACTCTACGGCTAAAG ACATGCTTGAGAATGCCTCAAGTCTACCACCTGTACACACTCCTGTGCAGGAACAACATC TTCCACCGTGTGCACCACCATTTCCACAAGGAAATGTTAAGGAAGTGAACCATCAGAAAG TTGATGTGATCAAAGAAACGAGTAATCTTCCTAATATATTTGAGATCAAATCAAGCTTGC TTCAGCAAATCAGGGATAAGCCAGATCTGCACAAGCTGAATGGACATGAAAAGTCCAAAG CAGTATTCAGTGATGTTAACAGTTTGGATGAAAGGGGGGAGTTGCTTCAGCAAATCAGGA GCAAGACATTCAACTTAAGACGAACAAATGGATCTAAGACAAACACCTCATCGCAGTCAA CCGAGTCCACTGCCAATTCCAGCGTTGTAGCAATTTTGGAGAAGGCGAATGCAATCCGAC AGGCTGTGGCCAGTGACGAGGGGGGTGATGATGATAACTGGAGCGATATCAACTGAGAAT GCATATGCCAAACCTTTTCTGTATATGCAACTAGTACAAGATGAAGAGTGAAAATGTGAA TAACACCTTTTTCTTCATTGTAATTAGATATTGCAGCTCTGTTTTTTAACCTTTTTTTAG TTCATGGTAGTGTATCTTAGA