Gene Data
Barley RTD
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Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u1923898.7--8789-113Containing




Transcripts from Gene HORVU3Hr1G029210

TranscriptLength(bp)Description
HORVU3Hr1G029210.15316gene=HORVU3Hr1G029210 CDS=911-3751
HORVU3Hr1G029210.24723gene=HORVU3Hr1G029210 CDS=502-4383
HORVU3Hr1G029210.34726gene=HORVU3Hr1G029210 CDS=502-4386
HORVU3Hr1G029210.44764gene=HORVU3Hr1G029210 CDS=474-4052
HORVU3Hr1G029210.54959gene=HORVU3Hr1G029210 CDS=1199-4654
HORVU3Hr1G029210.64960gene=HORVU3Hr1G029210 CDS=1235-4258
HORVU3Hr1G029210.74764gene=HORVU3Hr1G029210 CDS=490-4071
HORVU3Hr1G029210.83943gene=HORVU3Hr1G029210 CDS=340-3798
HORVU3Hr1G029210.94221gene=HORVU3Hr1G029210 CDS=195-4076
HORVU3Hr1G029210.104436gene=HORVU3Hr1G029210 CDS=425-4003
HORVU3Hr1G029210.114439gene=HORVU3Hr1G029210 CDS=425-4006
HORVU3Hr1G029210.123872gene=HORVU3Hr1G029210 CDS=1-3870
HORVU3Hr1G029210.134232gene=HORVU3Hr1G029210 CDS=495-4208



Exon Structure of HORVU3Hr1G029210


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g11040.1 +2 0.0 909 624/1079 (58%) protein|SCAR-like protein 2, putative, expressed
TAIR PP10None-----
BRACH PP3 Bradi2g06610.2.p +2 0.0 993 654/1098 (60%) pacid=32774244 transcript=Bradi2g06610.2 locus=Bradi2g06610 ID=Bradi2g06610.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons