- Transcript HORVU3Hr1G029210.8
- Transcript IDHORVU3Hr1G029210.8
- Gene IDHORVU3Hr1G029210
Barley RTD
Exon Structure of HORVU3Hr1G029210.8
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 133980544 | 133980346 | - |
| chr3H | 2 | 133980745 | 133980629 | - |
| chr3H | 3 | 133980989 | 133980885 | - |
| chr3H | 4 | 133981597 | 133981505 | - |
| chr3H | 5 | 133984488 | 133981692 | - |
| chr3H | 6 | 133984718 | 133984615 | - |
| chr3H | 7 | 133985187 | 133985055 | - |
| chr3H | 8 | 133985370 | 133985247 | - |
| chr3H | 9 | 133985932 | 133985769 | - |
| chr3H | 10 | 133986258 | 133986152 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g11040.1 | +1 | 0.0 | 1352 | 844/1306 (65%) | protein|SCAR-like protein 2, putative, expressed |
| TAIR PP10 | AT2G38440 @ ARAPORT AT2G38440.1 @ TAIR |
+1 | 4e-42 | 169 | 80/156 (51%) | Symbols: ITB1, SCAR2, DIS3, WAVE4, ATSCAR2 | SCAR homolog 2 | chr2:16095550-16100851 FORWARD LENGTH=1399 |
| BRACH PP3 | Bradi2g06610.1.p | +1 | 0.0 | 1476 | 878/1305 (67%) | pacid=32774243 transcript=Bradi2g06610.1 locus=Bradi2g06610 ID=Bradi2g06610.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3943 bp)
>HORVU3Hr1G029210.8 3943 150831_barley_pseudomolecules AAGATGGGATGCGGAAGAGGAGGGGGGAGATCTGACGGCTACACGCGTGCAAATCGGACT GATCCGGGCTGACCGGCCGAAACATTGGGCCGGCGCGCCGACGCAGAATTTGCGGCAGAT ATTTTTCATGACCTACACGAGCAAGTTATAACTACATCGTCTAGGGGGCGTAAGGTGTTG ACTCGAGTACAGAACATTGAAGCAGCACTTCCATCTCTTGAAAAAGCTGTGAAGAATCAG AAGAGCCATATACATTTTGCTTATGTACCAGGTTCTGACTGGCACACACAACTTCAAAAT GAGCAAAATCATCTCCTATCCAGTGATCTGCCTCGGTTTATGATGGATTCCTATGAAGAA TGTCGAGACCCACCACGACTTTACCTTCTCGACAAATTTGATAATGCTGGTGCTGGGGCT TGTTTGAAGAGATATTCTGATCCATCTTACTTCAAGAAATCATGGGATGTGATGAGAGCA GACAAGACTGCACATCTCCAAAAAGAAAGGAGATCTCATAAAATCAAGAGGAAAGGATCA CGCCTAAAAGAACCATATCATGGACAAGCCACATCCAGGCATAGGAATGGTGAATTGCAG CGAGCACTCACTGCTGTTCAACTCACCAGCAGCAGGCAGTGTGCATCTCCCAGCATGGAT GGCCAGAGTTTTTCGGAGCATAGATCTACATCTGATGCAAGATCCAACCCTGACAATATA AGCAGATCTTCTTCATTTAGTTCAAAGGCACGACTGAGTTTTGCAGAACAAGCTTCAGAT ACAAAGCCTTCTGTAATTCCTCATGAGAATGGTCATGCCAAGCTGTCAAATATTGATATG CACAAGCTTAATGATGCCTCTTCCCCCGTCTTGCTTAGCGAGACCAGGGAAGATGATCTG GGTGATGATTTGAAGCAAGGTTCCCTGTCAGATGAGATGAATGCTAGGTCACCTTCTGTT GAATGGCATGAAAAGGCTGCAATTGTCATGACTACAAGTTCTGTCTACTGTGATGATGTT GTCATGGATAGGGCTGAAAATGCAGAAACTAAACATATTAAGCCCGTGCAGCGAGAAGTT GATTATAGGGAGATGCAGACCTTGGAGCAGCAAGGGGCCTTACTTCAGAAGGCAAAGTTG TTATTACTGTCATCAGGCTTAAACCACCGTGATGAAGTCCCCTGTGAAACAGACAACTAC ATGGATGCACTTAACACACTTGAATCTGAGACAGAGACTGAAGTTGACTCTCAAACTAAA AAACAAGGGAAGCCAGTACATTCCTTCAATGCTCATGCACCTCAAATAGAGTTGACAGAT AATGCCGTTTCACAGCTTCCTGATTCTTCTCCTGTTGAGTTTCCTGATACAAGTCCAAAT TCCAGAATGTTACATACTTTTGAAAGAAGTGCCGATTTCCCCAGTTTGTCAAGTGCAGAT GCTCCGGATATTTCACAGCATTCATTGTCAGGTTATACAGATATACATCCTAATGAATGG TCATCTGTTACCACCATCCCTGAGAATAATGCAAATAATGCTGCTGGAGACCCCACTGAA ATTTCAGAACCGGCACTGCAAGCATATACACCTACACCACCCAATCAAAGGTGCCCTCGT GCAAATGAGATTCCTGAGAGTAAGGCAGAAGTTATCCCCAGAGATTCTCCTGTGATCTCA AAACCAGAGCTGTCAACCTATGCAGTTTTCCCTCCCAATAAAGAGTCTATTGTCAGTCAG ATCCCTGAGAATAGTGTAGAAGGTGTGTCAGAAGATGATACCAATGAAATCACTAGTTGT CTTGTACCGGAACCTTCCATTTCCTTTGCTCCAACTAGTGAGGCGTCTCCTGCAAAAATC TTACCTGGTTATAACACTGGTAACTCTGTAATTTCGGAAAGGAGTCCTCAGGATTATCCT GGAGAAAATCATCAGGAATTTGGTGGCTGTGGCATGGCTGAAGTGTCTAATTCACAGACC ATGCCTTTGAACGAGTCATCAGAGAATGGATCTGCAACCCAACACCTTCCCACACATGCT CCTACTAGTTCCCAACACCTTCCCACACATGCTCCGACTAGTTCTGTAGAATTATCTTCT GTTAAGCTCTGGACAAATGCTGGTCTCTTCGGACTTGAACCGTCTAAACCTCCAGTTGGC ATATGTCCAGGTTCTGCAAACCAAAGCTACCCAGAGAATAATCAATCAGCCACAAGAACA CCTGATGCAGTTTATAGCCAAACAAACCGGCCCTCAGATTCTTCCACATATTTCGAGCAC AGGGAGCACAGCAATTTGAATGGCAAGCAAGCTTCAATAAGTGAGCTCCTAGAATCTGAA GGTAATGCTGAAATTGGTGCTGAAACATACTCTGGCACTGACTTGGTTGGAAGGAATAAC TTGCCCGTGGTGTCTGCATCAAGCTTCTCGAGCATTGCACAAAGATTCCTTGCCAATACA CTTCAGAGAAGAACTTCTCCCAAATATAATGATCTTCCTATGTCATCTGGGAGAGTGAAT ACTGACACAAATGGGTTTGATGAAGCTACTGTAAATTCTACTCTTGCACCAAAGGAAACA GTATTCGAGGCATCTCAGTTTGAGAAGAAAACAGATTATGGCGTGGATGGACTGCCCAAG TCCTCTAGTTGCCATTACTCTGAGAAATCATCTCCGCCACTAGAGCATATGAAAATATCC TTTCACCCCATGAGTGCATCTGAAATGTCGAAATTGAACCTAGATTTTTCTGATGGCAAT CTTCATGAAAATGTTGATGATATGATGTTACCAACATTTCAGTTACTTCCAGGGTCTTCT GTCCCACAGCCTGGCAGTGGTTCTGAATCAGAAGATGACACCTTTGGTAGATCTTATAGT TATTCTTCATATGATGATCTAAGTCCGCGTTTATATTCAAACTCAGAGTTGTGGGATCAA GAAGATGGAATTGGATTCGAGGATAATGAGCTGTATAATGATTCAAATCAAATAGGATCC TCCACAACGCCTGTCTCTAGCTATATGGGATTCGAGCAGATGAACTTATCTGGTGAGAAG TCCACTATTTCACTTTCAGATATTGGAGATAATAACGGACTCGGCTCGTTAGAATCCCAT CCTGCTGGAGAACTTCCGAACTTTGACACTTTGATGTCAACAAGTAATCATCAAAATAGA GATGCGCTCATTCCACAAAATCCAATCAATTTATCACCAGTTGTAGATCAGATGCCGCCG CCACCTCCTCTTCCCCCAATGCAGTGGAGGACAATGAGACAAACAACTTCCCTAGAAGAA GAAAGAGACTCTACGGCTAAAGACATGCTTGAGAATGCCTCAAGTCTACCACCTGTACAC ACTCCTGTGCAGGAACAACATCTTCCACCGTGTGCACCACCATTTCCACAAGGAAATGTT AAGGAAGTGAACCATCAGAAAGTTGATGTGATCAAAGAAACGAGTAATCTTCCTAATATA TTTGAGATCAAATCAAGCTTGCTTCAGCAAATCAGGGATAAGCCAGATCTGCACAAGCTG AATGGACATGAAAAGTCCAAAGCAGTATTCAGTGATGTTAACAGTTTGGATGAAAGGGGG GAGTTGCTTCAGCAAATCAGGAGCAAGACATTCAACTTAAGACGAACAAATGGATCTAAG ACAAACACCTCATCGCAGTCAACCGAGTCCACTGCCAATTCCAGCGTTGTAGCAATTTTG GAGAAGGCGAATGCAATCCGACAGGCTGTGGCCAGTGACGAGGGGGGTGATGATGATAAC TGGAGCGATATCAACTGAGAATGCATATGCCAAACCTTTTCTGTATATGCAACTAGTACA AGATGAAGAGTGAAAATGTGAATAACACCTTTTTCTTCATTGTAATTAGATATTGCAGCT CTGTTTTTTAACCTTTTTTTAGTTCATGGTAGTGTATCTTAGA