- Transcript HORVU3Hr1G029210.6
- Transcript IDHORVU3Hr1G029210.6
- Gene IDHORVU3Hr1G029210
Barley RTD
Exon Structure of HORVU3Hr1G029210.6
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 133980544 | 133980186 | - |
| chr3H | 2 | 133980745 | 133980629 | - |
| chr3H | 3 | 133980989 | 133980885 | - |
| chr3H | 4 | 133984488 | 133981505 | - |
| chr3H | 5 | 133984718 | 133984615 | - |
| chr3H | 6 | 133985370 | 133985055 | - |
| chr3H | 7 | 133985932 | 133985769 | - |
| chr3H | 8 | 133988849 | 133988039 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g11040.1 | +2 | 0.0 | 1011 | 661/1071 (62%) | protein|SCAR-like protein 2, putative, expressed |
| TAIR PP10 | AT2G38440 @ ARAPORT AT2G38440.1 @ TAIR |
+3 | 6e-48 | 159 | 86/161 (53%) | Symbols: ITB1, SCAR2, DIS3, WAVE4, ATSCAR2 | SCAR homolog 2 | chr2:16095550-16100851 FORWARD LENGTH=1399 |
| BRACH PP3 | Bradi2g06610.1.p | +2 | 0.0 | 1100 | 691/1090 (63%) | pacid=32774243 transcript=Bradi2g06610.1 locus=Bradi2g06610 ID=Bradi2g06610.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4960 bp)
>HORVU3Hr1G029210.6 4960 150831_barley_pseudomolecules CAGAAGGCATGTTCCAACCCCCGGCACAAAAACGAAAAGACACCCCGAGGAAGTGAAAAC CAAGAAGGGCCAAGCACGGCCGGAAATGGCAAAGCACCCCCGGCCCCCGCGCGACCCAGC ACAGCACAGCACAGCACAGCACAGCAGCCTCCCACCACAACATAGCGGCGGCACCGGGTA TCGAGCATCCAAATCCAAGCCGAGCCCGAGAGCTGAAGCATAATCACGCGGCGCACACCA CTCACCAGTCGCCAGGCCGCGCCACTTGCCCACCCCCCTCGTGCCCGCAGCGCTGCGTGC GCTTCCCTTTCCCACCGTCCCTTTCGCCCCGCACCCTGTCGGAGACCGACGCTCCTCCCC TCCCCTCCCCGTCCCCGTCCCCGCCACGCGCCTCGGCGTCGCCTCCACTCCTCCCCCCCT CCCCGCCACTCGCCTCGGCCGCCCCCTTCCGTGCGGAGGCGGCAACCTGTGACGCCCCAA AGTCGGCGCACCTGCTCCCACTGGGAAAGTAGCCGTTGCGGCGTCGCATTTATAGCGACC GCCAGGCGTCACGATGGCCGCTGCTCGGCGGTGAGGAGGAGCCCGCTCTCGCGCGCTCGG TGGTTGGTGGAGCGGAGATGCCGCTGGTCAGGTTCGAGGTGCGGAATGAGGTCGGGCTGG GCGACCCCGGGCTGTACGGCGCCGCGGGGGCAGGGAAGCGAGGCGGCGCCGGCGCCGCCG CCGCAGGGGAGGCCGAGCCCAAGGCGCTGCTCGAGGGCGTCGCCGTCGCGGGCCTCGTCG GGATCCTGCGCCAGCTCGGAGATCTCGCCGAATTTGCGGCAGATATTTTTCATGACCTAC ACGAGCAAGTTATAACTACATCGTCTAGGGGGCGTAAGGTGTTGACTCGAGTACAGAACA TTGAAGCAGCACTTCCATCTCTTGAAAAAGCTGTGAAGAATCAGAAGAGCCATATACATT TTGCTTATGTACCAGGTTCTGACTGGCACACACAACTTCAAAATGAGCAAAATCATCTCC TATCCAGTGATCTGCCTCGGTTTATGATGGATTCCTATGAAGAATGTCGAGACCCACCAC GACTTTACCTTCTCGACAAGTAAGGATGCTTGTTTTTTTTTTTCAAGTGATTTTGGGTCT CTAATGACTTATTTTCAGATTTGATAATGCTGGTGCTGGGGCTTGTTTGAAGAGATATTC TGATCCATCTTACTTCAAGAAATCATGGGATGTGATGAGAGCAGACAAGACTGCACATCT CCAAAAAGAAAGGAGATCTCATAAAATCAAGAGGAAAGGATCACGCCTAAAAGAACCATA TCATGGACAAGCCACATCCAGGCATAGGAATGGTGAATTGCAGCGAGCACTCACTGCTGT TCAACTCACCAGCAGCAGGCAGTGTGCATCTCCCAGCATGGATGGCCAGAGTTTTTCGGA GCATAGATCTACATCTGATGCAAGATCCAACCCTGACAATATAAGCAGATCTTCTTCATT TAGTTCAAAGGCACGACTGAGTTTTGCAGAACAAGCTTCAGATACAAAGCCTTCTGTAAT TCCTCATGAGAATGGTCATGCCAAGCTGTCAAATATTGATATGCACAAGCTTAATGATGC CTCTTCCCCCGTCTTGCTTAGCGAGACCAGGGAAGATGATCTGGGTGATGATTTGAAGCA AGGTTCCCTGTCAGATGAGATGAATGCTAGGTCACCTTCTGTTGAATGGCATGAAAAGGC TGCAATTGTCATGACTACAAGTTCTGTCTACTGTGATGATGTTGTCATGGATAGGGCTGA AAATGCAGAAACTAAACATATTAAGCCCGTGCAGCGAGAAGTTGATTATAGGGAGATGCA GACCTTGGAGCAGCAAGGGGCCTTACTTCAGAAGGCAAAGTTGTTATTACTGTCATCAGG CTTAAACCACCGTGATGAAGTCCCCTGTGAAACAGACAACTACATGGATGCACTTAACAC ACTTGAATCTGAGACAGAGACTGAAGTTGACTCTCAAACTAAAAAACAAGGGAAGCCAGT ACATTCCTTCAATGCTCATGCACCTCAAATAGAGTTGACAGATAATGCCGTTTCACAGCT TCCTGATTCTTCTCCTGTTGAGTTTCCTGATACAAGTCCAAATTCCAGAATGTTACATAC TTTTGAAAGAAGTGCCGATTTCCCCAGTTTGTCAAGTGCAGATGCTCCGGATATTTCACA GCATTCATTGTCAGGTTATACAGATATACATCCTAATGAATGGTCATCTGTTACCACCAT CCCTGAGAATAATGCAAATAATGCTGCTGGAGACCCCACTGAAATTTCAGAACCGGCACT GCAAGCATATACACCTACACCACCCAATCAAAGGTGCCCTCGTGCAAATGAGATTCCTGA GAGTAAGGCAGAAGTTATCCCCAGAGATTCTCCTGTGATCTCAAAACCAGAGCTGTCAAC CTATGCAGTTTTCCCTCCCAATAAAGAGTCTATTGTCAGTCAGATCCCTGAGAATAGTGT AGAAGGTGTGTCAGAAGATGATACCAATGAAATCACTAGTTGTCTTGTACCGGAACCTTC CATTTCCTTTGCTCCAACTAGTGAGGCGTCTCCTGCAAAAATCTTACCTGGTTATAACAC TGGTAACTCTGTAATTTCGGAAAGGAGTCCTCAGGATTATCCTGGAGAAAATCATCAGGA ATTTGGTGGCTGTGGCATGGCTGAAGTGTCTAATTCACAGACCATGCCTTTGAACGAGTC ATCAGAGAATGGATCTGCAACCCAACACCTTCCCACACATGCTCCTACTAGTTCCCAACA CCTTCCCACACATGCTCCGACTAGTTCTGTAGAATTATCTTCTGTTAAGCTCTGGACAAA TGCTGGTCTCTTCGGACTTGAACCGTCTAAACCTCCAGTTGGCATATGTCCAGGTTCTGC AAACCAAAGCTACCCAGAGAATAATCAATCAGCCACAAGAACACCTGATGCAGTTTATAG CCAAACAAACCGGCCCTCAGATTCTTCCACATATTTCGAGCACAGGGAGCACAGCAATTT GAATGGCAAGCAAGCTTCAATAAGTGAGCTCCTAGAATCTGAAGGTAATGCTGAAATTGG TGCTGAAACATACTCTGGCACTGACTTGGTTGGAAGGAATAACTTGCCCGTGGTGTCTGC ATCAAGCTTCTCGAGCATTGCACAAAGATTCCTTGCCAATACACTTCAGAGAAGAACTTC TCCCAAATATAATGATCTTCCTATGTCATCTGGGAGAGTGAATACTGACACAAATGGGTT TGATGAAGCTACTGTAAATTCTACTCTTGCACCAAAGGAAACAGTATTCGAGGCATCTCA GTTTGAGAAGAAAACAGATTATGGCGTGGATGGACTGCCCAAGTCCTCTAGTTGCCATTA CTCTGAGAAATCATCTCCGCCACTAGAGCATATGAAAATATCCTTTCACCCCATGAGTGC ATCTGAAATGTCGAAATTGAACCTAGATTTTTCTGATGGCAATCTTCATGAAAATGTTGA TGATATGATGTTACCAACATTTCAGTTACTTCCAGGGTCTTCTGTCCCACAGCCTGGCAG TGGTTCTGAATCAGAAGATGACACCTTTGGTAGATCTTATAGTTATTCTTCATATGATGA TCTAAGTCCGCGTTTATATTCAAACTCAGAGTTGTGGGATCAAGAAGATGGAATTGGATT CGAGGATAATGAGCTGTATAATGATTCAAATCAAATAGGATCCTCCACAACGCCTGTCTC TAGCTATATGGGATTCGAGCAGATGAACTTATCTGGTGAGAAGTCCACTATTTCACTTTC AGATATTGGAGATAATAACGGACTCGGCTCGTTAGAATCCCATCCTGCTGGAGAACTTCC GAACTTTGACACTTTGATGTCAACAAGTAATCATCAAAATAGAGATGCGCTCATTCCACA AAATCCAATCAATTTATCACCAGTTGTAGATCAGATGCCGCCGCCACCTCCTCTTCCCCC AATGCAGTGGAGGACAATGAGACAAACAACTTCCCTAGAAGAAGAAAGAGACTCTACGGC TAAAGACATGCTTGAGAATGCCTCAAGTCTACCACCTGTACACACTCCTGTGCAGGAACA ACATCTTCCACCGTGTGCACCACCATTTCCACAAGGAAATGTTAAGGAAGTGGTAAGACT TAACCCTTTTTTGAATACCTTGGTAATGGTATCAGTTGTCATTGTAATCTCTTGCTGATG ACATTATATGGACTCTGTTCATGCAGAACCATCAGAAAGTTGATGTGATCAAAGAAACGA GTAATCTTCCTAATATATTTGAGATCAAATCAAGCTTGCTTCAGCAAATCAGGGATAAGC CAGATCTGCACAAGCTGAATGGACATGAAAAGTCCAAAGCAGTATTCAGTGATGTTAACA GTTTGGATGAAAGGGGGGAGTTGCTTCAGCAAATCAGGAGCAAGACATTCAACTTAAGAC GAACAAATGGATCTAAGACAAACACCTCATCGCAGTCAACCGAGTCCACTGCCAATTCCA GCGTTGTAGCAATTTTGGAGAAGGCGAATGCAATCCGACAGGCTGTGGCCAGTGACGAGG GGGGTGATGATGATAACTGGAGCGATATCAACTGAGAATGCATATGCCAAACCTTTTCTG TATATGCAACTAGTACAAGATGAAGAGTGAAAATGTGAATAACACCTTTTTCTTCATTGT AATTAGATATTGCAGCTCTGTTTTTTAACCTTTTTTTAGTTCATGGTAGTGTATCTTAGA TCCCTATGGTTGTAGAGATGTTAAATCATTTCAACATCATGTAAATTTATCTTATTATTT ATTAATGGTAGTGAGATGGACTAATAAAATAAGTATGTTAAGCTATCTTTTGTAGCATTG TACTAAAAATTGTCTCTTTGCATTGTTAATAAGATGGGGG