- Transcript HORVU3Hr1G029210.4
- Transcript IDHORVU3Hr1G029210.4
- Gene IDHORVU3Hr1G029210
Barley RTD
Exon Structure of HORVU3Hr1G029210.4
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 133980544 | 133980176 | - |
| chr3H | 2 | 133980745 | 133980629 | - |
| chr3H | 3 | 133980989 | 133980885 | - |
| chr3H | 4 | 133984485 | 133981505 | - |
| chr3H | 5 | 133984718 | 133984615 | - |
| chr3H | 6 | 133985187 | 133985055 | - |
| chr3H | 7 | 133985370 | 133985247 | - |
| chr3H | 8 | 133985932 | 133985769 | - |
| chr3H | 9 | 133988705 | 133988039 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g11040.1 | +3 | 0.0 | 1265 | 796/1233 (65%) | protein|SCAR-like protein 2, putative, expressed |
| TAIR PP10 | AT2G38440 @ ARAPORT AT2G38440.1 @ TAIR |
+3 | 5e-54 | 208 | 110/219 (50%) | Symbols: ITB1, SCAR2, DIS3, WAVE4, ATSCAR2 | SCAR homolog 2 | chr2:16095550-16100851 FORWARD LENGTH=1399 |
| BRACH PP3 | Bradi2g06610.1.p | +3 | 0.0 | 1343 | 831/1246 (67%) | pacid=32774243 transcript=Bradi2g06610.1 locus=Bradi2g06610 ID=Bradi2g06610.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4764 bp)
>HORVU3Hr1G029210.4 4764 150831_barley_pseudomolecules CAGCCTCCCACCACAACATAGCGGCGGCACCGGGTATCGAGCATCCAAATCCAAGCCGAG CCCGAGAGCTGAAGCATAATCACGCGGCGCACACCACTCACCAGTCGCCAGGCCGCGCCA CTTGCCCACCCCCCTCGTGCCCGCAGCGCTGCGTGCGCTTCCCTTTCCCACCGTCCCTTT CGCCCCGCACCCTGTCGGAGACCGACGCTCCTCCCCTCCCCTCCCCGTCCCCGTCCCCGC CACGCGCCTCGGCGTCGCCTCCACTCCTCCCCCCCTCCCCGCCACTCGCCTCGGCCGCCC CCTTCCGTGCGGAGGCGGCAACCTGTGACGCCCCAAAGTCGGCGCACCTGCTCCCACTGG GAAAGTAGCCGTTGCGGCGTCGCATTTATAGCGACCGCCAGGCGTCACGATGGCCGCTGC TCGGCGGTGAGGAGGAGCCCGCTCTCGCGCGCTCGGTGGTTGGTGGAGCGGAGATGCCGC TGGTCAGGTTCGAGGTGCGGAATGAGGTCGGGCTGGGCGACCCCGGGCTGTACGGCGCCG CGGGGGCAGGGAAGCGAGGCGGCGCCGGCGCCGCCGCCGCAGGGGAGGCCGAGCCCAAGG CGCTGCTCGAGGGCGTCGCCGTCGCGGGCCTCGTCGGGATCCTGCGCCAGCTCGGAGATC TCGCCGAATTTGCGGCAGATATTTTTCATGACCTACACGAGCAAGTTATAACTACATCGT CTAGGGGGCGTAAGGTGTTGACTCGAGTACAGAACATTGAAGCAGCACTTCCATCTCTTG AAAAAGCTGTGAAGAATCAGAAGAGCCATATACATTTTGCTTATGTACCAGGTTCTGACT GGCACACACAACTTCAAAATGAGCAAAATCATCTCCTATCCAGTGATCTGCCTCGGTTTA TGATGGATTCCTATGAAGAATGTCGAGACCCACCACGACTTTACCTTCTCGACAAATTTG ATAATGCTGGTGCTGGGGCTTGTTTGAAGAGATATTCTGATCCATCTTACTTCAAGAAAT CATGGGATGTGATGAGAGCAGACAAGACTGCACATCTCCAAAAAGAAAGGAGATCTCATA AAATCAAGAGGAAAGGATCACGCCTAAAAGAACCATATCATGGACAAGCCACATCCAGGC ATAGGAATGGTGAATTGCAGCGAGCACTCACTGCTGTTCAACTCACCAGCAGGCAGTGTG CATCTCCCAGCATGGATGGCCAGAGTTTTTCGGAGCATAGATCTACATCTGATGCAAGAT CCAACCCTGACAATATAAGCAGATCTTCTTCATTTAGTTCAAAGGCACGACTGAGTTTTG CAGAACAAGCTTCAGATACAAAGCCTTCTGTAATTCCTCATGAGAATGGTCATGCCAAGC TGTCAAATATTGATATGCACAAGCTTAATGATGCCTCTTCCCCCGTCTTGCTTAGCGAGA CCAGGGAAGATGATCTGGGTGATGATTTGAAGCAAGGTTCCCTGTCAGATGAGATGAATG CTAGGTCACCTTCTGTTGAATGGCATGAAAAGGCTGCAATTGTCATGACTACAAGTTCTG TCTACTGTGATGATGTTGTCATGGATAGGGCTGAAAATGCAGAAACTAAACATATTAAGC CCGTGCAGCGAGAAGTTGATTATAGGGAGATGCAGACCTTGGAGCAGCAAGGGGCCTTAC TTCAGAAGGCAAAGTTGTTATTACTGTCATCAGGCTTAAACCACCGTGATGAAGTCCCCT GTGAAACAGACAACTACATGGATGCACTTAACACACTTGAATCTGAGACAGAGACTGAAG TTGACTCTCAAACTAAAAAACAAGGGAAGCCAGTACATTCCTTCAATGCTCATGCACCTC AAATAGAGTTGACAGATAATGCCGTTTCACAGCTTCCTGATTCTTCTCCTGTTGAGTTTC CTGATACAAGTCCAAATTCCAGAATGTTACATACTTTTGAAAGAAGTGCCGATTTCCCCA GTTTGTCAAGTGCAGATGCTCCGGATATTTCACAGCATTCATTGTCAGGTTATACAGATA TACATCCTAATGAATGGTCATCTGTTACCACCATCCCTGAGAATAATGCAAATAATGCTG CTGGAGACCCCACTGAAATTTCAGAACCGGCACTGCAAGCATATACACCTACACCACCCA ATCAAAGGTGCCCTCGTGCAAATGAGATTCCTGAGAGTAAGGCAGAAGTTATCCCCAGAG ATTCTCCTGTGATCTCAAAACCAGAGCTGTCAACCTATGCAGTTTTCCCTCCCAATAAAG AGTCTATTGTCAGTCAGATCCCTGAGAATAGTGTAGAAGGTGTGTCAGAAGATGATACCA ATGAAATCACTAGTTGTCTTGTACCGGAACCTTCCATTTCCTTTGCTCCAACTAGTGAGG CGTCTCCTGCAAAAATCTTACCTGGTTATAACACTGGTAACTCTGTAATTTCGGAAAGGA GTCCTCAGGATTATCCTGGAGAAAATCATCAGGAATTTGGTGGCTGTGGCATGGCTGAAG TGTCTAATTCACAGACCATGCCTTTGAACGAGTCATCAGAGAATGGATCTGCAACCCAAC ACCTTCCCACACATGCTCCTACTAGTTCCCAACACCTTCCCACACATGCTCCGACTAGTT CTGTAGAATTATCTTCTGTTAAGCTCTGGACAAATGCTGGTCTCTTCGGACTTGAACCGT CTAAACCTCCAGTTGGCATATGTCCAGGTTCTGCAAACCAAAGCTACCCAGAGAATAATC AATCAGCCACAAGAACACCTGATGCAGTTTATAGCCAAACAAACCGGCCCTCAGATTCTT CCACATATTTCGAGCACAGGGAGCACAGCAATTTGAATGGCAAGCAAGCTTCAATAAGTG AGCTCCTAGAATCTGAAGGTAATGCTGAAATTGGTGCTGAAACATACTCTGGCACTGACT TGGTTGGAAGGAATAACTTGCCCGTGGTGTCTGCATCAAGCTTCTCGAGCATTGCACAAA GATTCCTTGCCAATACACTTCAGAGAAGAACTTCTCCCAAATATAATGATCTTCCTATGT CATCTGGGAGAGTGAATACTGACACAAATGGGTTTGATGAAGCTACTGTAAATTCTACTC TTGCACCAAAGGAAACAGTATTCGAGGCATCTCAGTTTGAGAAGAAAACAGATTATGGCG TGGATGGACTGCCCAAGTCCTCTAGTTGCCATTACTCTGAGAAATCATCTCCGCCACTAG AGCATATGAAAATATCCTTTCACCCCATGAGTGCATCTGAAATGTCGAAATTGAACCTAG ATTTTTCTGATGGCAATCTTCATGAAAATGTTGATGATATGATGTTACCAACATTTCAGT TACTTCCAGGGTCTTCTGTCCCACAGCCTGGCAGTGGTTCTGAATCAGAAGATGACACCT TTGGTAGATCTTATAGTTATTCTTCATATGATGATCTAAGTCCGCGTTTATATTCAAACT CAGAGTTGTGGGATCAAGAAGATGGAATTGGATTCGAGGATAATGAGCTGTATAATGATT CAAATCAAATAGGATCCTCCACAACGCCTGTCTCTAGCTATATGGGATTCGAGCAGATGA ACTTATCTGGTGAGAAGTCCACTATTTCACTTTCAGATATTGGAGATAATAACGGACTCG GCTCGTTAGAATCCCATCCTGCTGGAGAACTTCCGAACTTTGACACTTTGATGTCAACAA GTAATCATCAAAATAGAGATGCGCTCATTCCACAAAATCCAATCAATTTATCACCAGTTG TAGATCAGATGCCGCCGCCACCTCCTCTTCCCCCAATGCAGTGGAGGACAATGAGACAAA CAACTTCCCTAGAAGAAGAAAGAGACTCTACGGCTAAAGACATGCTTGAGAATGCCTCAA GTCTACCACCTGTACACACTCCTGTGCAGGAACAACATCTTCCACCGTGTGCACCACCAT TTCCACAAGGAAATGTTAAGGAAGTGGTAAGACTTAACCCTTTTTTGAATACCTTGGTAA TGGTATCAGTTGTCATTGTAATCTCTTGCTGATGACATTATATGGACTCTGTTCATGCAG AACCATCAGAAAGTTGATGTGATCAAAGAAACGAGTAATCTTCCTAATATATTTGAGATC AAATCAAGCTTGCTTCAGCAAATCAGGGATAAGCCAGATCTGCACAAGCTGAATGGACAT GAAAAGTCCAAAGCAGTATTCAGTGATGTTAACAGTTTGGATGAAAGGGGGGAGTTGCTT CAGCAAATCAGGAGCAAGACATTCAACTTAAGACGAACAAATGGATCTAAGACAAACACC TCATCGCAGTCAACCGAGTCCACTGCCAATTCCAGCGTTGTAGCAATTTTGGAGAAGGCG AATGCAATCCGACAGGCTGTGGCCAGTGACGAGGGGGGTGATGATGATAACTGGAGCGAT ATCAACTGAGAATGCATATGCCAAACCTTTTCTGTATATGCAACTAGTACAAGATGAAGA GTGAAAATGTGAATAACACCTTTTTCTTCATTGTAATTAGATATTGCAGCTCTGTTTTTT AACCTTTTTTTAGTTCATGGTAGTGTATCTTAGATCCCTATGGTTGTAGAGATGTTAAAT CATTTCAACATCATGTAAATTTATCTTATTATTTATTAATGGTAGTGAGATGGACTAATA AAATAAGTATGTTAAGCTATCTTTTGTAGCATTGTACTAAAAATTGTCTCTTTGCATTGT TAATAAGATGGGGGCATACTGATA