- Transcript HORVU3Hr1G029210.13
- Transcript IDHORVU3Hr1G029210.13
- Gene IDHORVU3Hr1G029210
Barley RTD
Exon Structure of HORVU3Hr1G029210.13
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 133981597 | 133981376 | - |
| chr3H | 2 | 133984488 | 133981692 | - |
| chr3H | 3 | 133984718 | 133984615 | - |
| chr3H | 4 | 133985187 | 133985055 | - |
| chr3H | 5 | 133985370 | 133985247 | - |
| chr3H | 6 | 133985932 | 133985769 | - |
| chr3H | 7 | 133988726 | 133988039 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g11040.1 | +3 | 0.0 | 1287 | 821/1285 (64%) | protein|SCAR-like protein 2, putative, expressed |
| TAIR PP10 | AT2G38440 @ ARAPORT AT2G38440.1 @ TAIR |
+3 | 4e-54 | 208 | 110/219 (50%) | Symbols: ITB1, SCAR2, DIS3, WAVE4, ATSCAR2 | SCAR homolog 2 | chr2:16095550-16100851 FORWARD LENGTH=1399 |
| BRACH PP3 | Bradi2g06610.1.p | +3 | 0.0 | 1392 | 857/1279 (67%) | pacid=32774243 transcript=Bradi2g06610.1 locus=Bradi2g06610 ID=Bradi2g06610.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4232 bp)
>HORVU3Hr1G029210.13 4232 150831_barley_pseudomolecules GCACAGCACAGCACAGCACAGCAGCCTCCCACCACAACATAGCGGCGGCACCGGGTATCG AGCATCCAAATCCAAGCCGAGCCCGAGAGCTGAAGCATAATCACGCGGCGCACACCACTC ACCAGTCGCCAGGCCGCGCCACTTGCCCACCCCCCTCGTGCCCGCAGCGCTGCGTGCGCT TCCCTTTCCCACCGTCCCTTTCGCCCCGCACCCTGTCGGAGACCGACGCTCCTCCCCTCC CCTCCCCGTCCCCGTCCCCGCCACGCGCCTCGGCGTCGCCTCCACTCCTCCCCCCCTCCC CGCCACTCGCCTCGGCCGCCCCCTTCCGTGCGGAGGCGGCAACCTGTGACGCCCCAAAGT CGGCGCACCTGCTCCCACTGGGAAAGTAGCCGTTGCGGCGTCGCATTTATAGCGACCGCC AGGCGTCACGATGGCCGCTGCTCGGCGGTGAGGAGGAGCCCGCTCTCGCGCGCTCGGTGG TTGGTGGAGCGGAGATGCCGCTGGTCAGGTTCGAGGTGCGGAATGAGGTCGGGCTGGGCG ACCCCGGGCTGTACGGCGCCGCGGGGGCAGGGAAGCGAGGCGGCGCCGGCGCCGCCGCCG CAGGGGAGGCCGAGCCCAAGGCGCTGCTCGAGGGCGTCGCCGTCGCGGGCCTCGTCGGGA TCCTGCGCCAGCTCGGAGATCTCGCCGAATTTGCGGCAGATATTTTTCATGACCTACACG AGCAAGTTATAACTACATCGTCTAGGGGGCGTAAGGTGTTGACTCGAGTACAGAACATTG AAGCAGCACTTCCATCTCTTGAAAAAGCTGTGAAGAATCAGAAGAGCCATATACATTTTG CTTATGTACCAGGTTCTGACTGGCACACACAACTTCAAAATGAGCAAAATCATCTCCTAT CCAGTGATCTGCCTCGGTTTATGATGGATTCCTATGAAGAATGTCGAGACCCACCACGAC TTTACCTTCTCGACAAATTTGATAATGCTGGTGCTGGGGCTTGTTTGAAGAGATATTCTG ATCCATCTTACTTCAAGAAATCATGGGATGTGATGAGAGCAGACAAGACTGCACATCTCC AAAAAGAAAGGAGATCTCATAAAATCAAGAGGAAAGGATCACGCCTAAAAGAACCATATC ATGGACAAGCCACATCCAGGCATAGGAATGGTGAATTGCAGCGAGCACTCACTGCTGTTC AACTCACCAGCAGCAGGCAGTGTGCATCTCCCAGCATGGATGGCCAGAGTTTTTCGGAGC ATAGATCTACATCTGATGCAAGATCCAACCCTGACAATATAAGCAGATCTTCTTCATTTA GTTCAAAGGCACGACTGAGTTTTGCAGAACAAGCTTCAGATACAAAGCCTTCTGTAATTC CTCATGAGAATGGTCATGCCAAGCTGTCAAATATTGATATGCACAAGCTTAATGATGCCT CTTCCCCCGTCTTGCTTAGCGAGACCAGGGAAGATGATCTGGGTGATGATTTGAAGCAAG GTTCCCTGTCAGATGAGATGAATGCTAGGTCACCTTCTGTTGAATGGCATGAAAAGGCTG CAATTGTCATGACTACAAGTTCTGTCTACTGTGATGATGTTGTCATGGATAGGGCTGAAA ATGCAGAAACTAAACATATTAAGCCCGTGCAGCGAGAAGTTGATTATAGGGAGATGCAGA CCTTGGAGCAGCAAGGGGCCTTACTTCAGAAGGCAAAGTTGTTATTACTGTCATCAGGCT TAAACCACCGTGATGAAGTCCCCTGTGAAACAGACAACTACATGGATGCACTTAACACAC TTGAATCTGAGACAGAGACTGAAGTTGACTCTCAAACTAAAAAACAAGGGAAGCCAGTAC ATTCCTTCAATGCTCATGCACCTCAAATAGAGTTGACAGATAATGCCGTTTCACAGCTTC CTGATTCTTCTCCTGTTGAGTTTCCTGATACAAGTCCAAATTCCAGAATGTTACATACTT TTGAAAGAAGTGCCGATTTCCCCAGTTTGTCAAGTGCAGATGCTCCGGATATTTCACAGC ATTCATTGTCAGGTTATACAGATATACATCCTAATGAATGGTCATCTGTTACCACCATCC CTGAGAATAATGCAAATAATGCTGCTGGAGACCCCACTGAAATTTCAGAACCGGCACTGC AAGCATATACACCTACACCACCCAATCAAAGGTGCCCTCGTGCAAATGAGATTCCTGAGA GTAAGGCAGAAGTTATCCCCAGAGATTCTCCTGTGATCTCAAAACCAGAGCTGTCAACCT ATGCAGTTTTCCCTCCCAATAAAGAGTCTATTGTCAGTCAGATCCCTGAGAATAGTGTAG AAGGTGTGTCAGAAGATGATACCAATGAAATCACTAGTTGTCTTGTACCGGAACCTTCCA TTTCCTTTGCTCCAACTAGTGAGGCGTCTCCTGCAAAAATCTTACCTGGTTATAACACTG GTAACTCTGTAATTTCGGAAAGGAGTCCTCAGGATTATCCTGGAGAAAATCATCAGGAAT TTGGTGGCTGTGGCATGGCTGAAGTGTCTAATTCACAGACCATGCCTTTGAACGAGTCAT CAGAGAATGGATCTGCAACCCAACACCTTCCCACACATGCTCCTACTAGTTCCCAACACC TTCCCACACATGCTCCGACTAGTTCTGTAGAATTATCTTCTGTTAAGCTCTGGACAAATG CTGGTCTCTTCGGACTTGAACCGTCTAAACCTCCAGTTGGCATATGTCCAGGTTCTGCAA ACCAAAGCTACCCAGAGAATAATCAATCAGCCACAAGAACACCTGATGCAGTTTATAGCC AAACAAACCGGCCCTCAGATTCTTCCACATATTTCGAGCACAGGGAGCACAGCAATTTGA ATGGCAAGCAAGCTTCAATAAGTGAGCTCCTAGAATCTGAAGGTAATGCTGAAATTGGTG CTGAAACATACTCTGGCACTGACTTGGTTGGAAGGAATAACTTGCCCGTGGTGTCTGCAT CAAGCTTCTCGAGCATTGCACAAAGATTCCTTGCCAATACACTTCAGAGAAGAACTTCTC CCAAATATAATGATCTTCCTATGTCATCTGGGAGAGTGAATACTGACACAAATGGGTTTG ATGAAGCTACTGTAAATTCTACTCTTGCACCAAAGGAAACAGTATTCGAGGCATCTCAGT TTGAGAAGAAAACAGATTATGGCGTGGATGGACTGCCCAAGTCCTCTAGTTGCCATTACT CTGAGAAATCATCTCCGCCACTAGAGCATATGAAAATATCCTTTCACCCCATGAGTGCAT CTGAAATGTCGAAATTGAACCTAGATTTTTCTGATGGCAATCTTCATGAAAATGTTGATG ATATGATGTTACCAACATTTCAGTTACTTCCAGGGTCTTCTGTCCCACAGCCTGGCAGTG GTTCTGAATCAGAAGATGACACCTTTGGTAGATCTTATAGTTATTCTTCATATGATGATC TAAGTCCGCGTTTATATTCAAACTCAGAGTTGTGGGATCAAGAAGATGGAATTGGATTCG AGGATAATGAGCTGTATAATGATTCAAATCAAATAGGATCCTCCACAACGCCTGTCTCTA GCTATATGGGATTCGAGCAGATGAACTTATCTGGTGAGAAGTCCACTATTTCACTTTCAG ATATTGGAGATAATAACGGACTCGGCTCGTTAGAATCCCATCCTGCTGGAGAACTTCCGA ACTTTGACACTTTGATGTCAACAAGTAATCATCAAAATAGAGATGCGCTCATTCCACAAA ATCCAATCAATTTATCACCAGTTGTAGATCAGATGCCGCCGCCACCTCCTCTTCCCCCAA TGCAGTGGAGGACAATGAGACAAACAACTTCCCTAGAAGAAGAAAGAGACTCTACGGCTA AAGACATGCTTGAGAATGCCTCAAGTCTACCACCTGTACACACTCCTGTGCAGGAACAAC ATCTTCCACCGTGTGCACCACCATTTCCACAAGGAAATGTTAAGGAAGTGAACCATCAGA AAGTTGATGTGATCAAAGAAACGAGTAATCTTCCTAATATATTTGAGATCAAATCAAGCT TGCTTCAGCAAATCAGGGATAAGGTTTGTTTTATTTTAATTTTATTTTTAAGGAAATGTT ATTTATCATCTATGCTCTCACTCTGGCTACTTTCCACCAATGAGTTCAAAAGGAAAAAGT GCAAGTGAAGAACCCACTTCCTCTTCCCCAGT