- Transcript HORVU3Hr1G029210.12
- Transcript IDHORVU3Hr1G029210.12
- Gene IDHORVU3Hr1G029210
Barley RTD
Exon Structure of HORVU3Hr1G029210.12
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 133980745 | 133980585 | - |
| chr3H | 2 | 133980989 | 133980885 | - |
| chr3H | 3 | 133981597 | 133981505 | - |
| chr3H | 4 | 133984485 | 133981692 | - |
| chr3H | 5 | 133984718 | 133984615 | - |
| chr3H | 6 | 133985187 | 133985055 | - |
| chr3H | 7 | 133985370 | 133985247 | - |
| chr3H | 8 | 133985932 | 133985769 | - |
| chr3H | 9 | 133988232 | 133988039 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g11040.1 | +1 | 0.0 | 1372 | 880/1360 (65%) | protein|SCAR-like protein 2, putative, expressed |
| TAIR PP10 | AT2G38440 @ ARAPORT AT2G38440.1 @ TAIR |
+1 | 9e-55 | 210 | 110/219 (50%) | Symbols: ITB1, SCAR2, DIS3, WAVE4, ATSCAR2 | SCAR homolog 2 | chr2:16095550-16100851 FORWARD LENGTH=1399 |
| BRACH PP3 | Bradi2g06610.1.p | +1 | 0.0 | 1486 | 909/1352 (67%) | pacid=32774243 transcript=Bradi2g06610.1 locus=Bradi2g06610 ID=Bradi2g06610.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3872 bp)
>HORVU3Hr1G029210.12 3872 150831_barley_pseudomolecules ATGCCGCTGGTCAGGTTCGAGGTGCGGAATGAGGTCGGGCTGGGCGACCCCGGGCTGTAC GGCGCCGCGGGGGCAGGGAAGCGAGGCGGCGCCGGCGCCGCCGCCGCAGGGGAGGCCGAG CCCAAGGCGCTGCTCGAGGGCGTCGCCGTCGCGGGCCTCGTCGGGATCCTGCGCCAGCTC GGAGATCTCGCCGAATTTGCGGCAGATATTTTTCATGACCTACACGAGCAAGTTATAACT ACATCGTCTAGGGGGCGTAAGGTGTTGACTCGAGTACAGAACATTGAAGCAGCACTTCCA TCTCTTGAAAAAGCTGTGAAGAATCAGAAGAGCCATATACATTTTGCTTATGTACCAGGT TCTGACTGGCACACACAACTTCAAAATGAGCAAAATCATCTCCTATCCAGTGATCTGCCT CGGTTTATGATGGATTCCTATGAAGAATGTCGAGACCCACCACGACTTTACCTTCTCGAC AAATTTGATAATGCTGGTGCTGGGGCTTGTTTGAAGAGATATTCTGATCCATCTTACTTC AAGAAATCATGGGATGTGATGAGAGCAGACAAGACTGCACATCTCCAAAAAGAAAGGAGA TCTCATAAAATCAAGAGGAAAGGATCACGCCTAAAAGAACCATATCATGGACAAGCCACA TCCAGGCATAGGAATGGTGAATTGCAGCGAGCACTCACTGCTGTTCAACTCACCAGCAGG CAGTGTGCATCTCCCAGCATGGATGGCCAGAGTTTTTCGGAGCATAGATCTACATCTGAT GCAAGATCCAACCCTGACAATATAAGCAGATCTTCTTCATTTAGTTCAAAGGCACGACTG AGTTTTGCAGAACAAGCTTCAGATACAAAGCCTTCTGTAATTCCTCATGAGAATGGTCAT GCCAAGCTGTCAAATATTGATATGCACAAGCTTAATGATGCCTCTTCCCCCGTCTTGCTT AGCGAGACCAGGGAAGATGATCTGGGTGATGATTTGAAGCAAGGTTCCCTGTCAGATGAG ATGAATGCTAGGTCACCTTCTGTTGAATGGCATGAAAAGGCTGCAATTGTCATGACTACA AGTTCTGTCTACTGTGATGATGTTGTCATGGATAGGGCTGAAAATGCAGAAACTAAACAT ATTAAGCCCGTGCAGCGAGAAGTTGATTATAGGGAGATGCAGACCTTGGAGCAGCAAGGG GCCTTACTTCAGAAGGCAAAGTTGTTATTACTGTCATCAGGCTTAAACCACCGTGATGAA GTCCCCTGTGAAACAGACAACTACATGGATGCACTTAACACACTTGAATCTGAGACAGAG ACTGAAGTTGACTCTCAAACTAAAAAACAAGGGAAGCCAGTACATTCCTTCAATGCTCAT GCACCTCAAATAGAGTTGACAGATAATGCCGTTTCACAGCTTCCTGATTCTTCTCCTGTT GAGTTTCCTGATACAAGTCCAAATTCCAGAATGTTACATACTTTTGAAAGAAGTGCCGAT TTCCCCAGTTTGTCAAGTGCAGATGCTCCGGATATTTCACAGCATTCATTGTCAGGTTAT ACAGATATACATCCTAATGAATGGTCATCTGTTACCACCATCCCTGAGAATAATGCAAAT AATGCTGCTGGAGACCCCACTGAAATTTCAGAACCGGCACTGCAAGCATATACACCTACA CCACCCAATCAAAGGTGCCCTCGTGCAAATGAGATTCCTGAGAGTAAGGCAGAAGTTATC CCCAGAGATTCTCCTGTGATCTCAAAACCAGAGCTGTCAACCTATGCAGTTTTCCCTCCC AATAAAGAGTCTATTGTCAGTCAGATCCCTGAGAATAGTGTAGAAGGTGTGTCAGAAGAT GATACCAATGAAATCACTAGTTGTCTTGTACCGGAACCTTCCATTTCCTTTGCTCCAACT AGTGAGGCGTCTCCTGCAAAAATCTTACCTGGTTATAACACTGGTAACTCTGTAATTTCG GAAAGGAGTCCTCAGGATTATCCTGGAGAAAATCATCAGGAATTTGGTGGCTGTGGCATG GCTGAAGTGTCTAATTCACAGACCATGCCTTTGAACGAGTCATCAGAGAATGGATCTGCA ACCCAACACCTTCCCACACATGCTCCTACTAGTTCCCAACACCTTCCCACACATGCTCCG ACTAGTTCTGTAGAATTATCTTCTGTTAAGCTCTGGACAAATGCTGGTCTCTTCGGACTT GAACCGTCTAAACCTCCAGTTGGCATATGTCCAGGTTCTGCAAACCAAAGCTACCCAGAG AATAATCAATCAGCCACAAGAACACCTGATGCAGTTTATAGCCAAACAAACCGGCCCTCA GATTCTTCCACATATTTCGAGCACAGGGAGCACAGCAATTTGAATGGCAAGCAAGCTTCA ATAAGTGAGCTCCTAGAATCTGAAGGTAATGCTGAAATTGGTGCTGAAACATACTCTGGC ACTGACTTGGTTGGAAGGAATAACTTGCCCGTGGTGTCTGCATCAAGCTTCTCGAGCATT GCACAAAGATTCCTTGCCAATACACTTCAGAGAAGAACTTCTCCCAAATATAATGATCTT CCTATGTCATCTGGGAGAGTGAATACTGACACAAATGGGTTTGATGAAGCTACTGTAAAT TCTACTCTTGCACCAAAGGAAACAGTATTCGAGGCATCTCAGTTTGAGAAGAAAACAGAT TATGGCGTGGATGGACTGCCCAAGTCCTCTAGTTGCCATTACTCTGAGAAATCATCTCCG CCACTAGAGCATATGAAAATATCCTTTCACCCCATGAGTGCATCTGAAATGTCGAAATTG AACCTAGATTTTTCTGATGGCAATCTTCATGAAAATGTTGATGATATGATGTTACCAACA TTTCAGTTACTTCCAGGGTCTTCTGTCCCACAGCCTGGCAGTGGTTCTGAATCAGAAGAT GACACCTTTGGTAGATCTTATAGTTATTCTTCATATGATGATCTAAGTCCGCGTTTATAT TCAAACTCAGAGTTGTGGGATCAAGAAGATGGAATTGGATTCGAGGATAATGAGCTGTAT AATGATTCAAATCAAATAGGATCCTCCACAACGCCTGTCTCTAGCTATATGGGATTCGAG CAGATGAACTTATCTGGTGAGAAGTCCACTATTTCACTTTCAGATATTGGAGATAATAAC GGACTCGGCTCGTTAGAATCCCATCCTGCTGGAGAACTTCCGAACTTTGACACTTTGATG TCAACAAGTAATCATCAAAATAGAGATGCGCTCATTCCACAAAATCCAATCAATTTATCA CCAGTTGTAGATCAGATGCCGCCGCCACCTCCTCTTCCCCCAATGCAGTGGAGGACAATG AGACAAACAACTTCCCTAGAAGAAGAAAGAGACTCTACGGCTAAAGACATGCTTGAGAAT GCCTCAAGTCTACCACCTGTACACACTCCTGTGCAGGAACAACATCTTCCACCGTGTGCA CCACCATTTCCACAAGGAAATGTTAAGGAAGTGAACCATCAGAAAGTTGATGTGATCAAA GAAACGAGTAATCTTCCTAATATATTTGAGATCAAATCAAGCTTGCTTCAGCAAATCAGG GATAAGCCAGATCTGCACAAGCTGAATGGACATGAAAAGTCCAAAGCAGTATTCAGTGAT GTTAACAGTTTGGATGAAAGGGGGGAGTTGCTTCAGCAAATCAGGAGCAAGACATTCAAC TTAAGACGAACAAATGGATCTAAGACAAACACCTCATCGCAGTCAACCGAGTCCACTGCC AATTCCAGCGTTGTAGCAATTTTGGAGAAGGCGAATGCAATCCGACAGGTATGCATTGCC TTAATATTTCCCCTCGTATCAGATTTTTGGTT