- Transcript HORVU3Hr1G029210.10
- Transcript IDHORVU3Hr1G029210.10
- Gene IDHORVU3Hr1G029210
Barley RTD
Exon Structure of HORVU3Hr1G029210.10
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 133980745 | 133980539 | - |
| chr3H | 2 | 133980989 | 133980885 | - |
| chr3H | 3 | 133984485 | 133981505 | - |
| chr3H | 4 | 133984718 | 133984615 | - |
| chr3H | 5 | 133985187 | 133985055 | - |
| chr3H | 6 | 133985370 | 133985247 | - |
| chr3H | 7 | 133985932 | 133985769 | - |
| chr3H | 8 | 133988656 | 133988039 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g11040.1 | +2 | 0.0 | 1265 | 803/1233 (65%) | protein|SCAR-like protein 2, putative, expressed |
| TAIR PP10 | AT2G38440 @ ARAPORT AT2G38440.1 @ TAIR |
+2 | 5e-54 | 208 | 110/219 (50%) | Symbols: ITB1, SCAR2, DIS3, WAVE4, ATSCAR2 | SCAR homolog 2 | chr2:16095550-16100851 FORWARD LENGTH=1399 |
| BRACH PP3 | Bradi2g06610.1.p | +2 | 0.0 | 1344 | 831/1246 (67%) | pacid=32774243 transcript=Bradi2g06610.1 locus=Bradi2g06610 ID=Bradi2g06610.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4436 bp)
>HORVU3Hr1G029210.10 4436 150831_barley_pseudomolecules TCCAAGCCGAGCCCGAGAGCTGAAGCATAATCACGCGGCGCACACCACTCACCAGTCGCC AGGCCGCGCCACTTGCCCACCCCCCTCGTGCCCGCAGCGCTGCGTGCGCTTCCCTTTCCC ACCGTCCCTTTCGCCCCGCACCCTGTCGGAGACCGACGCTCCTCCCCTCCCCTCCCCGTC CCCGTCCCCGCCACGCGCCTCGGCGTCGCCTCCACTCCTCCCCCCCTCCCCGCCACTCGC CTCGGCCGCCCCCTTCCGTGCGGAGGCGGCAACCTGTGACGCCCCAAAGTCGGCGCACCT GCTCCCACTGGGAAAGTAGCCGTTGCGGCGTCGCATTTATAGCGACCGCCAGGCGTCACG ATGGCCGCTGCTCGGCGGTGAGGAGGAGCCCGCTCTCGCGCGCTCGGTGGTTGGTGGAGC GGAGATGCCGCTGGTCAGGTTCGAGGTGCGGAATGAGGTCGGGCTGGGCGACCCCGGGCT GTACGGCGCCGCGGGGGCAGGGAAGCGAGGCGGCGCCGGCGCCGCCGCCGCAGGGGAGGC CGAGCCCAAGGCGCTGCTCGAGGGCGTCGCCGTCGCGGGCCTCGTCGGGATCCTGCGCCA GCTCGGAGATCTCGCCGAATTTGCGGCAGATATTTTTCATGACCTACACGAGCAAGTTAT AACTACATCGTCTAGGGGGCGTAAGGTGTTGACTCGAGTACAGAACATTGAAGCAGCACT TCCATCTCTTGAAAAAGCTGTGAAGAATCAGAAGAGCCATATACATTTTGCTTATGTACC AGGTTCTGACTGGCACACACAACTTCAAAATGAGCAAAATCATCTCCTATCCAGTGATCT GCCTCGGTTTATGATGGATTCCTATGAAGAATGTCGAGACCCACCACGACTTTACCTTCT CGACAAATTTGATAATGCTGGTGCTGGGGCTTGTTTGAAGAGATATTCTGATCCATCTTA CTTCAAGAAATCATGGGATGTGATGAGAGCAGACAAGACTGCACATCTCCAAAAAGAAAG GAGATCTCATAAAATCAAGAGGAAAGGATCACGCCTAAAAGAACCATATCATGGACAAGC CACATCCAGGCATAGGAATGGTGAATTGCAGCGAGCACTCACTGCTGTTCAACTCACCAG CAGGCAGTGTGCATCTCCCAGCATGGATGGCCAGAGTTTTTCGGAGCATAGATCTACATC TGATGCAAGATCCAACCCTGACAATATAAGCAGATCTTCTTCATTTAGTTCAAAGGCACG ACTGAGTTTTGCAGAACAAGCTTCAGATACAAAGCCTTCTGTAATTCCTCATGAGAATGG TCATGCCAAGCTGTCAAATATTGATATGCACAAGCTTAATGATGCCTCTTCCCCCGTCTT GCTTAGCGAGACCAGGGAAGATGATCTGGGTGATGATTTGAAGCAAGGTTCCCTGTCAGA TGAGATGAATGCTAGGTCACCTTCTGTTGAATGGCATGAAAAGGCTGCAATTGTCATGAC TACAAGTTCTGTCTACTGTGATGATGTTGTCATGGATAGGGCTGAAAATGCAGAAACTAA ACATATTAAGCCCGTGCAGCGAGAAGTTGATTATAGGGAGATGCAGACCTTGGAGCAGCA AGGGGCCTTACTTCAGAAGGCAAAGTTGTTATTACTGTCATCAGGCTTAAACCACCGTGA TGAAGTCCCCTGTGAAACAGACAACTACATGGATGCACTTAACACACTTGAATCTGAGAC AGAGACTGAAGTTGACTCTCAAACTAAAAAACAAGGGAAGCCAGTACATTCCTTCAATGC TCATGCACCTCAAATAGAGTTGACAGATAATGCCGTTTCACAGCTTCCTGATTCTTCTCC TGTTGAGTTTCCTGATACAAGTCCAAATTCCAGAATGTTACATACTTTTGAAAGAAGTGC CGATTTCCCCAGTTTGTCAAGTGCAGATGCTCCGGATATTTCACAGCATTCATTGTCAGG TTATACAGATATACATCCTAATGAATGGTCATCTGTTACCACCATCCCTGAGAATAATGC AAATAATGCTGCTGGAGACCCCACTGAAATTTCAGAACCGGCACTGCAAGCATATACACC TACACCACCCAATCAAAGGTGCCCTCGTGCAAATGAGATTCCTGAGAGTAAGGCAGAAGT TATCCCCAGAGATTCTCCTGTGATCTCAAAACCAGAGCTGTCAACCTATGCAGTTTTCCC TCCCAATAAAGAGTCTATTGTCAGTCAGATCCCTGAGAATAGTGTAGAAGGTGTGTCAGA AGATGATACCAATGAAATCACTAGTTGTCTTGTACCGGAACCTTCCATTTCCTTTGCTCC AACTAGTGAGGCGTCTCCTGCAAAAATCTTACCTGGTTATAACACTGGTAACTCTGTAAT TTCGGAAAGGAGTCCTCAGGATTATCCTGGAGAAAATCATCAGGAATTTGGTGGCTGTGG CATGGCTGAAGTGTCTAATTCACAGACCATGCCTTTGAACGAGTCATCAGAGAATGGATC TGCAACCCAACACCTTCCCACACATGCTCCTACTAGTTCCCAACACCTTCCCACACATGC TCCGACTAGTTCTGTAGAATTATCTTCTGTTAAGCTCTGGACAAATGCTGGTCTCTTCGG ACTTGAACCGTCTAAACCTCCAGTTGGCATATGTCCAGGTTCTGCAAACCAAAGCTACCC AGAGAATAATCAATCAGCCACAAGAACACCTGATGCAGTTTATAGCCAAACAAACCGGCC CTCAGATTCTTCCACATATTTCGAGCACAGGGAGCACAGCAATTTGAATGGCAAGCAAGC TTCAATAAGTGAGCTCCTAGAATCTGAAGGTAATGCTGAAATTGGTGCTGAAACATACTC TGGCACTGACTTGGTTGGAAGGAATAACTTGCCCGTGGTGTCTGCATCAAGCTTCTCGAG CATTGCACAAAGATTCCTTGCCAATACACTTCAGAGAAGAACTTCTCCCAAATATAATGA TCTTCCTATGTCATCTGGGAGAGTGAATACTGACACAAATGGGTTTGATGAAGCTACTGT AAATTCTACTCTTGCACCAAAGGAAACAGTATTCGAGGCATCTCAGTTTGAGAAGAAAAC AGATTATGGCGTGGATGGACTGCCCAAGTCCTCTAGTTGCCATTACTCTGAGAAATCATC TCCGCCACTAGAGCATATGAAAATATCCTTTCACCCCATGAGTGCATCTGAAATGTCGAA ATTGAACCTAGATTTTTCTGATGGCAATCTTCATGAAAATGTTGATGATATGATGTTACC AACATTTCAGTTACTTCCAGGGTCTTCTGTCCCACAGCCTGGCAGTGGTTCTGAATCAGA AGATGACACCTTTGGTAGATCTTATAGTTATTCTTCATATGATGATCTAAGTCCGCGTTT ATATTCAAACTCAGAGTTGTGGGATCAAGAAGATGGAATTGGATTCGAGGATAATGAGCT GTATAATGATTCAAATCAAATAGGATCCTCCACAACGCCTGTCTCTAGCTATATGGGATT CGAGCAGATGAACTTATCTGGTGAGAAGTCCACTATTTCACTTTCAGATATTGGAGATAA TAACGGACTCGGCTCGTTAGAATCCCATCCTGCTGGAGAACTTCCGAACTTTGACACTTT GATGTCAACAAGTAATCATCAAAATAGAGATGCGCTCATTCCACAAAATCCAATCAATTT ATCACCAGTTGTAGATCAGATGCCGCCGCCACCTCCTCTTCCCCCAATGCAGTGGAGGAC AATGAGACAAACAACTTCCCTAGAAGAAGAAAGAGACTCTACGGCTAAAGACATGCTTGA GAATGCCTCAAGTCTACCACCTGTACACACTCCTGTGCAGGAACAACATCTTCCACCGTG TGCACCACCATTTCCACAAGGAAATGTTAAGGAAGTGGTAAGACTTAACCCTTTTTTGAA TACCTTGGTAATGGTATCAGTTGTCATTGTAATCTCTTGCTGATGACATTATATGGACTC TGTTCATGCAGAACCATCAGAAAGTTGATGTGATCAAAGAAACGAGTAATCTTCCTAATA TATTTGAGATCAAATCAAGCTTGCTTCAGCAAATCAGGGATAAGCCAGATCTGCACAAGC TGAATGGACATGAAAAGTCCAAAGCAGTATTCAGTGATGTTAACAGTTTGGATGAAAGGG GGGAGTTGCTTCAGCAAATCAGGAGCAAGACATTCAACTTAAGACGAACAAATGGATCTA AGACAAACACCTCATCGCAGTCAACCGAGTCCACTGCCAATTCCAGCGTTGTAGCAATTT TGGAGAAGGCGAATGCAATCCGACAGGTATGCATTGCCTTAATATTTCCCCTCGTATCAG ATTTTTGGTTATTCTTTGTTTCCCCCTGATTACTTCCATGATATTATCAGGCTGTG