- Transcript HORVU3Hr1G029210.1
- Transcript IDHORVU3Hr1G029210.1
- Gene IDHORVU3Hr1G029210
Barley RTD
Exon Structure of HORVU3Hr1G029210.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 133985376 | 133980061 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g11040.1 | +2 | 0.0 | 909 | 624/1079 (58%) | protein|SCAR-like protein 2, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g06610.2.p | +2 | 0.0 | 993 | 654/1098 (60%) | pacid=32774244 transcript=Bradi2g06610.2 locus=Bradi2g06610 ID=Bradi2g06610.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (5316 bp)
>HORVU3Hr1G029210.1 5316 150831_barley_pseudomolecules ATGCAGGTTCTGACTGGCACACACAACTTCAAAATGAGCAAAATCATCTCCTATCCAGTG ATCTGCCTCGGTTTATGATGGATTCCTATGAAGAATGTCGAGACCCACCACGACTTTACC TTCTCGACAAGTAAGGATGCTTGTTTTTTTTTTTCAAGTGATTTTGGGTCTCTAATGACT TATTTTCAGATTTGATAATGCTGGTGCTGGGGCTTGTTTGAAGAGATATTCTGATCCATC TTACTTCAAGAAATCATGGGATGTGATGAGAGCAGACAAGACTGCACATCTCCAAAAAGA AAGGAGATCTCATAAAATCAAGGTTCTATTTCTCGTTTTCTGCGTCCGGAGATCAATGTC TATGCTTAGCTATTTTAGTCAACACACAGGCACAACCAACTTAAAATCAATTTAGTTGTG GTGTTACTGCTCCCGTCTACTCGTATGAGCATGACAACCATTATGTACTAATCTGAAATT AATTATTACGGAACACTATTATTTAAGCCACGTCAAGTCTTTATTGCTAAATGCATTGCT GAGCTACCGTGCTTCATTATTGGATGGCTGTGGCTTATTGCTGTTAGTTTGGCCGATGCA ATTTTTTTTTCTTCTTGTTGGTAACTTTATGCTGAAAGACTTGATTGAACTTGGACAGAG GAAAGGATCACGCCTAAAAGAACCATATCATGGACAAGCCACATCCAGGCATAGGAATGG TGAATTGCAGCGAGCACTCACTGCTGTTCAACTCACCAGCAGGTTTTACACATAAATTCC AAACTTGAAGATACAACAACTGCATATATTTTTCATCATCAATGACTTTGTTTTTCTTGT GTATTTAATAATACATCTAGGACAGTACTCATAATAATTCTTTTGTAGCAGGCAGTGTGC ATCTCCCAGCATGGATGGCCAGAGTTTTTCGGAGCATAGATCTACATCTGATGCAAGATC CAACCCTGACAATATAAGCAGATCTTCTTCATTTAGTTCAAAGGCACGACTGAGTTTTGC AGAACAAGCTTCAGATACAAAGCCTTCTGTAATTCCTCATGAGAATGGTCATGCCAAGCT GTCAAATATTGATATGCACAAGCTTAATGATGCCTCTTCCCCCGTCTTGCTTAGCGAGAC CAGGGAAGATGATCTGGGTGATGATTTGAAGCAAGGTTCCCTGTCAGATGAGATGAATGC TAGGTCACCTTCTGTTGAATGGCATGAAAAGGCTGCAATTGTCATGACTACAAGTTCTGT CTACTGTGATGATGTTGTCATGGATAGGGCTGAAAATGCAGAAACTAAACATATTAAGCC CGTGCAGCGAGAAGTTGATTATAGGGAGATGCAGACCTTGGAGCAGCAAGGGGCCTTACT TCAGAAGGCAAAGTTGTTATTACTGTCATCAGGCTTAAACCACCGTGATGAAGTCCCCTG TGAAACAGACAACTACATGGATGCACTTAACACACTTGAATCTGAGACAGAGACTGAAGT TGACTCTCAAACTAAAAAACAAGGGAAGCCAGTACATTCCTTCAATGCTCATGCACCTCA AATAGAGTTGACAGATAATGCCGTTTCACAGCTTCCTGATTCTTCTCCTGTTGAGTTTCC TGATACAAGTCCAAATTCCAGAATGTTACATACTTTTGAAAGAAGTGCCGATTTCCCCAG TTTGTCAAGTGCAGATGCTCCGGATATTTCACAGCATTCATTGTCAGGTTATACAGATAT ACATCCTAATGAATGGTCATCTGTTACCACCATCCCTGAGAATAATGCAAATAATGCTGC TGGAGACCCCACTGAAATTTCAGAACCGGCACTGCAAGCATATACACCTACACCACCCAA TCAAAGGTGCCCTCGTGCAAATGAGATTCCTGAGAGTAAGGCAGAAGTTATCCCCAGAGA TTCTCCTGTGATCTCAAAACCAGAGCTGTCAACCTATGCAGTTTTCCCTCCCAATAAAGA GTCTATTGTCAGTCAGATCCCTGAGAATAGTGTAGAAGGTGTGTCAGAAGATGATACCAA TGAAATCACTAGTTGTCTTGTACCGGAACCTTCCATTTCCTTTGCTCCAACTAGTGAGGC GTCTCCTGCAAAAATCTTACCTGGTTATAACACTGGTAACTCTGTAATTTCGGAAAGGAG TCCTCAGGATTATCCTGGAGAAAATCATCAGGAATTTGGTGGCTGTGGCATGGCTGAAGT GTCTAATTCACAGACCATGCCTTTGAACGAGTCATCAGAGAATGGATCTGCAACCCAACA CCTTCCCACACATGCTCCTACTAGTTCCCAACACCTTCCCACACATGCTCCGACTAGTTC TGTAGAATTATCTTCTGTTAAGCTCTGGACAAATGCTGGTCTCTTCGGACTTGAACCGTC TAAACCTCCAGTTGGCATATGTCCAGGTTCTGCAAACCAAAGCTACCCAGAGAATAATCA ATCAGCCACAAGAACACCTGATGCAGTTTATAGCCAAACAAACCGGCCCTCAGATTCTTC CACATATTTCGAGCACAGGGAGCACAGCAATTTGAATGGCAAGCAAGCTTCAATAAGTGA GCTCCTAGAATCTGAAGGTAATGCTGAAATTGGTGCTGAAACATACTCTGGCACTGACTT GGTTGGAAGGAATAACTTGCCCGTGGTGTCTGCATCAAGCTTCTCGAGCATTGCACAAAG ATTCCTTGCCAATACACTTCAGAGAAGAACTTCTCCCAAATATAATGATCTTCCTATGTC ATCTGGGAGAGTGAATACTGACACAAATGGGTTTGATGAAGCTACTGTAAATTCTACTCT TGCACCAAAGGAAACAGTATTCGAGGCATCTCAGTTTGAGAAGAAAACAGATTATGGCGT GGATGGACTGCCCAAGTCCTCTAGTTGCCATTACTCTGAGAAATCATCTCCGCCACTAGA GCATATGAAAATATCCTTTCACCCCATGAGTGCATCTGAAATGTCGAAATTGAACCTAGA TTTTTCTGATGGCAATCTTCATGAAAATGTTGATGATATGATGTTACCAACATTTCAGTT ACTTCCAGGGTCTTCTGTCCCACAGCCTGGCAGTGGTTCTGAATCAGAAGATGACACCTT TGGTAGATCTTATAGTTATTCTTCATATGATGATCTAAGTCCGCGTTTATATTCAAACTC AGAGTTGTGGGATCAAGAAGATGGAATTGGATTCGAGGATAATGAGCTGTATAATGATTC AAATCAAATAGGATCCTCCACAACGCCTGTCTCTAGCTATATGGGATTCGAGCAGATGAA CTTATCTGGTGAGAAGTCCACTATTTCACTTTCAGATATTGGAGATAATAACGGACTCGG CTCGTTAGAATCCCATCCTGCTGGAGAACTTCCGAACTTTGACACTTTGATGTCAACAAG TAATCATCAAAATAGAGATGCGCTCATTCCACAAAATCCAATCAATTTATCACCAGTTGT AGATCAGATGCCGCCGCCACCTCCTCTTCCCCCAATGCAGTGGAGGACAATGAGACAAAC AACTTCCCTAGAAGAAGAAAGAGACTCTACGGCTAAAGACATGCTTGAGAATGCCTCAAG TCTACCACCTGTACACACTCCTGTGCAGGAACAACATCTTCCACCGTGTGCACCACCATT TCCACAAGGAAATGTTAAGGAAGTGGTAAGACTTAACCCTTTTTTGAATACCTTGGTAAT GGTATCAGTTGTCATTGTAATCTCTTGCTGATGACATTATATGGACTCTGTTCATGCAGA ACCATCAGAAAGTTGATGTGATCAAAGAAACGAGTAATCTTCCTAATATATTTGAGATCA AATCAAGCTTGCTTCAGCAAATCAGGGATAAGGTTTGTTTTATTTTAATTTTATTTTTAA GGAAATGTTATTTATCATCTATGCTCTCACTCTGGCTACTTTCCACCAATGAGTTCAAAA GGAAAAAGTGCAAGTGAAGAACCCACTTCCTCTTCCCCAGTCTGAAAGTTCGTTTTTGGA TAATTATTTGGTAATTCTATTGATACAAGTGACGAGTTGGCTAAATTTGTTAAAAATGAA ACTTCGTGTGTGTGATATGTGTAGTCAGACCAATAGAATCAAAGTTATGGGTTCATCACT GCGAGTGAGTTAGCATTTTATGTTCATAAAATTAATGCCATAACAAGTACTCGCTCTGTA ACTTAATACAAGATGTTTTTGACACTGCCATAGACTCTAAAAACGTCTTATAAAAAGTTA CAGAGGTAGTAACATTTATAATAACGGTTAGTTGACTCTTAACTTGCAAGGTCATTACCT AGTTTGTAGCATTTGACTGTCATCGATACTTACGTTTCTCCTCACTTTACATATCAAACT ATTGCAGCCAGATCTGCACAAGCTGAATGGACATGAAAAGTCCAAAGCAGTATTCAGTGA TGTTAACAGTTTGGATGAAAGGGGGGAGTTGCTTCAGCAAATCAGGAGCAAGGTAGGTCA AATATATGAACTGGTGTACTTGCGTACCACAGCCCTTCATGCCCTTTGAGATTTGTTGAT TCTCTTCAGTTGCACCACAGCACACTAAAGGACCACACTCACTAGTTTGTTAACATGTTT GTACAATCCAGACATTCAACTTAAGACGAACAAATGGATCTAAGACAAACACCTCATCGC AGTCAACCGAGTCCACTGCCAATTCCAGCGTTGTAGCAATTTTGGAGAAGGCGAATGCAA TCCGACAGGTATGCATTGCCTTAATATTTCCCCTCGTATCAGATTTTTGGTTATTCTTTG TTTCCCCCTGATTACTTCCATGATATTATCAGGCTGTGGCCAGTGACGAGGGGGGTGATG ATGATAACTGGAGCGATATCAACTGAGAATGCATATGCCAAACCTTTTCTGTATATGCAA CTAGTACAAGATGAAGAGTGAAAATGTGAATAACACCTTTTTCTTCATTGTAATTAGATA TTGCAGCTCTGTTTTTTAACCTTTTTTTAGTTCATGGTAGTGTATCTTAGATCCCTATGG TTGTAGAGATGTTAAATCATTTCAACATCATGTAAATTTATCTTATTATTTATTAATGGT AGTGAGATGGACTAATAAAATAAGTATGTTAAGCTATCTTTTGTAGCATTGTACTAAAAA TTGTCTCTTTGCATTGTTAATAAGATGGGGGCATACTGATAAAAAAGTTATGCTGTCATT TGCAAGCATGCTATTTTTTTTGGCGAAGGCAAAATAATTCTTAAGAAATCTCGCTGCATT ACCTCCATGCTTTGTATTTGAGTAGCAAAATCTAAA