- Transcript HORVU3Hr1G021140.3
- Transcript IDHORVU3Hr1G021140.3
- Gene IDHORVU3Hr1G021140
Barley RTD
Exon Structure of HORVU3Hr1G021140.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 67423171 | 67421735 | - |
| chr3H | 2 | 67425398 | 67425189 | - |
| chr3H | 3 | 67425680 | 67425530 | - |
| chr3H | 4 | 67425991 | 67425751 | - |
| chr3H | 5 | 67426259 | 67426201 | - |
| chr3H | 6 | 67426950 | 67426694 | - |
| chr3H | 7 | 67427189 | 67427047 | - |
| chr3H | 8 | 67427333 | 67427278 | - |
| chr3H | 9 | 67427506 | 67427429 | - |
| chr3H | 10 | 67427705 | 67427601 | - |
| chr3H | 11 | 67427994 | 67427855 | - |
| chr3H | 12 | 67429952 | 67429767 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g08700.6 | +1 | 0.0 | 1457 | 757/858 (88%) | protein|GIGANTEA, putative, expressed |
| TAIR PP10 | AT1G22770 @ ARAPORT AT1G22770.1 @ TAIR |
+1 | 0.0 | 1063 | 587/875 (67%) | Symbols: GI, FB | gigantea protein (GI) | chr1:8062398-8067447 FORWARD LENGTH=1173 |
| BRACH PP3 | Bradi2g05226.1.p | +1 | 0.0 | 1529 | 793/852 (93%) | pacid=32776210 transcript=Bradi2g05226.1 locus=Bradi2g05226 ID=Bradi2g05226.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3063 bp)
>HORVU3Hr1G021140.3 3063 150831_barley_pseudomolecules ACCGCCTACCCCTCCCATTACGGAAAAAATCTTTTTCTCGCCTCTCCTCGCCCCTCACAT TTTTCTCTCTCCTCCTCCTCCTCCTCTCTGCCTTCGCCTCTGCCTCAGCCTCGCCCGCCG CGCAATCCCGTCGCCGGCGCCGCCGATTCGCCGCCCGAGCTCCGTATTGGGGCGCTCCCG ACCGAGAGACGTTAAGCGCCTATGGTTGGAACTGGTTGATATGATATCTGGTCACATTGT GGGATGCAATCCCCCCTTAGTGGGGGGTGATTGAAGAAGTCAACAATAGGAGAACTTGCA TCTTGCTGAAGTTTTCTGGTACTGAGGCTCTTAAACTACCAAGTATGTCAGCGTCAAATG GGAAGTGGATTGATGGACTCCAGTTCTCATCACTGTTCTGGCCCCCGCCACACGATGCGC AGCAGAAACAGGCACAAATTTTAGCCTATGTTGAGTACTTTGGTCAGTTCACATCTGACA GCGAGCAATTCCCGGAGGATGTAGCTCAGGCTAATTCAAACTTGCTATCCATCAAAAGAA AAGCGGTTGGTAGATGAAGTATTAGCAACTTTTGTTCTCCATCACCCCGAGCATGGTCAT GCAGTTGTACATCCAATTCTTTCACGCATCATAGACGGGACACTGAGTTATGATAGTCAT GGTTCCCCATTCAATTCCTTCATCTCCTTATTTACCCAAAGTTCTGAGAAAGAGTACTCA GAGCAGTGGGCCTTGGCCTGTGGAGAGATTCTTAGAGTTCTAACTCACTACAACAGGCCA ATCTTTAAAGTTGCAGACTGTAACAACACCTCTGACCAGGCTACAACAAGTTGTTCTGCA CAGGAGAAAGCTAATTACTCTCCAGGAAATGAACCTGAACGGAAGCCATTGAGGCCATTA TCTCCTTGGATCACAGATATTTTGCTAACTGCACCTTTAGGCATTAGAAGCGACTATTTT AGATGGTGTGGTGGAGTTATGGGAAAATACGCAGCTGGTGGAGAATTGAAGCCTCCAACA ACTGCTTACAGCCGAGGAGCTGGTAAGCACCCACAACTCATGCCATCCACCCCAAGATGG GCTGTTGCCAATGGAGCTGGAGTTATTTTAAGTGTCTGTGATGAGGAAGTAGCTCGTTAT GAGACAGCAAACTTAACCGCGGCAGCTGTTCCCGCCCTTCTGCTACCTCCACCGACAACA CCCTTGGATGAGCATTTGGTGGCAGGGCTACCCCCTCTTGAGCCATACGCTCGCTTGTTT CATAGATACTATGCAATTGCCACACCAAGTGCTACACAAAGATTGCTTTTTGGTCTTCTT GAAGCACCACCATCATGGGCTCCAGATGCACTTGATGCAGCAGTTCAGCTTGTTGAACTC CTTCGGGCAGCTGAAGATTATGCTACTGGCATGCGGCTTCCAAAAAATTGGTTGCATCTT CATTTCTTGCGTGCGATTGGAACTGCAATGTCTATGAGGGCTGGTATTGCTGCCGATACA GCTGCTGCGTTGCTTTTTCGCATACTATCCCAACCAACGTTGCTTTTTCCTCCACTAAGG CATGCTGAAGGAGTTGAAGTGCAACATGAACCACTGGGTGGCTATGTATCATCATACAAA AGACAGCTGGAAGTTCCTGCATCTGAAACCACAATTGATGCCACTGCACAAGGCATTGCT TCCTTGCTGTGTGCTCATGGTCCTGATGTTGAGTGGAGAATATGTACCATCTGGGAAGCT GCCTATGGTTTGTTACCTCTGAATTCATCAGCAGTTGATTTGCCCGAAATCGTTGTAGCT GCTCCGCTTCAGCCACCTACTTTGTCATGGAGCCTATACTTGCCACTGTTGAAAGTATTC GAGTATCTACCTCGTGGAAGTCCATCTGAAGCATGCCTTATGAGAATATTTGTGGCAACA GTTGAAGCTATACTCAGAAGAACTTTCCCTTCGGAAACCTCTGAATCATCTAAAAGACCA AGAAGTCAATCCAAGAACCTTGCTGTTGCTGAACTCCGTACAATGATACATTCACTCTTT GTTGAATCATGTGCTTCAATGAACCTTGCTTCCCGGTTGTTGTTTGTTGTATTAACTGTT TGCGTCAGTCATCAAGCTTTGCCAGGGGGCAGCAAAAGACCAACGGGTAGTGAAAACCAT TCTTCTGAGGAGGCCACTGAGGACCCAAGATTAACCAATGGAAGAAATAAGGTCAAGAAG AAACAAGGGCCTGTTGGTACATTTGACTCGTATGTGCTGGCTGCTGTTTGTGCCTTATCT TGTGAGCTTCAGCTGTTCCCTATCCTTTGCAAGAGTGCAACAAACTCAAAAGTAAAAGAC TCTATAAAGATCCTGAAGCCTGGAAAAAACAATGGGATCAGTAATGAGCTACAGAATAGC ATTAGCTCAGCAATTCTCCATACTCGTAGAATTCTTGGCATCCTGGAAGCTCTTTTCTCC TTGAAGCCATCATCAGTTGGTACCTCCTGGAACTATAGTTCAAATGAGATAGTTGCAGCG GCTATGGTTGCCGCTCATGTTTCTGAGTTATTTCGCCGGTCGAGGCCATGCCTAAATGCA CTATCTTCACTGAAGCGATGTAAGTGGGATGCTGAGATTTCTACCAGGGCATCATCCCTT TACCATTTGATCGATTTGCATGGTAAAACTGTGTCCTCCATCGTGAACAAAGCTGAGCCT CTAGAAGCTCACCTGACTTTTACATCAGTAAAGAGAGATGGTCAACAACACATTGAGGAA AACAGCACCAGCTCATCGGGTAATGGCAACTTGGAAAAGAAGAATGCTTCAGCCTCACAC ATGAAAAATGGTTTTTCAAGACCACTCTTGAAATGCTCAGAAGAGGCTAGGCGAAATGGT AATGTTGCAAGTACATCCGGGAAAGTTCCTGCAACTTTACAGGCTGAAGCATCTGATTTG GCTAACTTCCTTACCATGGATAGAAATGGGGGTTATCGAGGCTCTCAGACTCTCCTAAGT TCTGTTATCTCAGAAAAACAGGAATTATGCTTCTCTGTTGTCTCATTGCTCTGGCATAAG CTT