- Gene HORVU3Hr1G021140
- Gene IDHORVU3Hr1G021140
- Location chr3H: 67421435 - 67430123
Barley RTD
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| BART1_0-u18690 | 99.5 | - | - | 8399 | 246 | Partial-Overlap |
Transcripts from Gene HORVU3Hr1G021140
| Transcript | Length(bp) | Description |
|---|---|---|
| HORVU3Hr1G021140.1 | 1776 | gene=HORVU3Hr1G021140 CDS=1-1755 |
| HORVU3Hr1G021140.2 | 2931 | gene=HORVU3Hr1G021140 CDS=1-2931 |
| HORVU3Hr1G021140.3 | 3063 | gene=HORVU3Hr1G021140 CDS=979-3063 |
| HORVU3Hr1G021140.4 | 3141 | gene=HORVU3Hr1G021140 CDS=421-3141 |
| HORVU3Hr1G021140.5 | 3206 | gene=HORVU3Hr1G021140 CDS=487-3204 |
| HORVU3Hr1G021140.6 | 3210 | gene=HORVU3Hr1G021140 CDS=494-3208 |
| HORVU3Hr1G021140.7 | 3236 | gene=HORVU3Hr1G021140 CDS=1153-3234 |
| HORVU3Hr1G021140.8 | 3236 | gene=HORVU3Hr1G021140 CDS=520-3234 |
| HORVU3Hr1G021140.9 | 3244 | gene=HORVU3Hr1G021140 CDS=528-3242 |
| HORVU3Hr1G021140.10 | 3232 | gene=HORVU3Hr1G021140 CDS=516-3230 |
| HORVU3Hr1G021140.11 | 1632 | gene=HORVU3Hr1G021140 CDS=336-1631 |
| HORVU3Hr1G021140.12 | 1709 | gene=HORVU3Hr1G021140 CDS=336-1037 |
| HORVU3Hr1G021140.13 | 1284 | gene=HORVU3Hr1G021140 CDS=1-1284 |
Exon Structure of HORVU3Hr1G021140
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g08700.6 | +3 | 0.0 | 1566 | 806/911 (88%) | protein|GIGANTEA, putative, expressed |
| TAIR PP10 | AT1G22770 @ ARAPORT AT1G22770.1 @ TAIR |
+3 | 0.0 | 1142 | 623/928 (67%) | Symbols: GI, FB | gigantea protein (GI) | chr1:8062398-8067447 FORWARD LENGTH=1173 |
| BRACH PP3 | Bradi2g05226.1.p | +3 | 0.0 | 1645 | 845/905 (93%) | pacid=32776210 transcript=Bradi2g05226.1 locus=Bradi2g05226 ID=Bradi2g05226.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons