- Transcript HORVU3Hr1G021140.1
- Transcript IDHORVU3Hr1G021140.1
- Gene IDHORVU3Hr1G021140
Barley RTD
Exon Structure of HORVU3Hr1G021140.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 67423210 | 67421435 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g08700.6 | +1 | 0.0 | 814 | 416/480 (87%) | protein|GIGANTEA, putative, expressed |
| TAIR PP10 | AT1G22770 @ ARAPORT AT1G22770.1 @ TAIR |
+1 | 8e-177 | 532 | 300/500 (60%) | Symbols: GI, FB | gigantea protein (GI) | chr1:8062398-8067447 FORWARD LENGTH=1173 |
| BRACH PP3 | Bradi2g05226.1.p | +1 | 0.0 | 854 | 437/480 (91%) | pacid=32776210 transcript=Bradi2g05226.1 locus=Bradi2g05226 ID=Bradi2g05226.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1776 bp)
>HORVU3Hr1G021140.1 1776 150831_barley_pseudomolecules ATGACTAATTTACCTGCTTGCACTTTGAACTATTCACAGCTGGAAGTTCCTGCATCTGAA ACCACAATTGATGCCACTGCACAAGGCATTGCTTCCTTGCTGTGTGCTCATGGTCCTGAT GTTGAGTGGAGAATATGTACCATCTGGGAAGCTGCCTATGGTTTGTTACCTCTGAATTCA TCAGCAGTTGATTTGCCCGAAATCGTTGTAGCTGCTCCGCTTCAGCCACCTACTTTGTCA TGGAGCCTATACTTGCCACTGTTGAAAGTATTCGAGTATCTACCTCGTGGAAGTCCATCT GAAGCATGCCTTATGAGAATATTTGTGGCAACAGTTGAAGCTATACTCAGAAGAACTTTC CCTTCGGAAACCTCTGAATCATCTAAAAGACCAAGAAGTCAATCCAAGAACCTTGCTGTT GCTGAACTCCGTACAATGATACATTCACTCTTTGTTGAATCATGTGCTTCAATGAACCTT GCTTCCCGGTTGTTGTTTGTTGTATTAACTGTTTGCGTCAGTCATCAAGCTTTGCCAGGG GGCAGCAAAAGACCAACGGGTAGTGAAAACCATTCTTCTGAGGAGGCCACTGAGGACCCA AGATTAACCAATGGAAGAAATAAGGTCAAGAAGAAACAAGGGCCTGTTGGTACATTTGAC TCGTATGTGCTGGCTGCTGTTTGTGCCTTATCTTGTGAGCTTCAGCTGTTCCCTATCCTT TGCAAGAGTGCAACAAACTCAAAAGTAAAAGACTCTATAAAGATCCTGAAGCCTGGAAAA AACAATGGGATCAGTAATGAGCTACAGAATAGCATTAGCTCAGCAATTCTCCATACTCGT AGAATTCTTGGCATCCTGGAAGCTCTTTTCTCCTTGAAGCCATCATCAGTTGGTACCTCC TGGAACTATAGTTCAAATGAGATAGTTGCAGCGGCTATGGTTGCCGCTCATGTTTCTGAG TTATTTCGCCGGTCGAGGCCATGCCTAAATGCACTATCTTCACTGAAGCGATGTAAGTGG GATGCTGAGATTTCTACCAGGGCATCATCCCTTTACCATTTGATCGATTTGCATGGTAAA ACTGTGTCCTCCATCGTGAACAAAGCTGAGCCTCTAGAAGCTCACCTGACTTTTACATCA GTAAAGAGAGATGGTCAACAACACATTGAGGAAAACAGCACCAGCTCATCGGGTAATGGC AACTTGGAAAAGAAGAATGCTTCAGCCTCACACATGAAAAATGGTTTTTCAAGACCACTC TTGAAATGCTCAGAAGAGGCTAGGCGAAATGGTAATGTTGCAAGTACATCCGGGAAAGTT CCTGCAACTTTACAGGCTGAAGCATCTGATTTGGCTAACTTCCTTACCATGGATAGAAAT GGGGGTTATCGAGGCTCTCAGACTCTCCTAAGTTCTGTTATCTCAGAAAAACAGGAATTA TGCTTCTCTGTTGTCTCATTGCTCTGGCATAAGCTTGCATGCNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNTTATCCCCCTGTTTATTGCTAGAAAAACAACCTCAATC CATCATCTCCTTCCTCTTTCTCTCACCCACCGTGCTAAACCCCAGTGGGCAGTGGGACCA CGACATGAAGCCGGGCACGGGCATGACCACGGCCACGACAGTCACCCGGGCGCGGGTGCG GGCACGAACACGTGAGCGAGCCGGGCGCGCCCATGA