Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G013720.5

ChromosomeExonStartStopDirection
chr3H13043344030433276+
chr3H23043478130434706+
chr3H33043491830434860+
chr3H43043517130435032+
chr3H53043577630435721+
chr3H63043593130435855+
chr3H73043608730436021+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g05680.1 +1 3e-122 346 160/196 (82%) protein|geranylgeranyl transferase type-1 subunit beta, putative, expressed
TAIR PP10 AT2G39550 @ ARAPORT
AT2G39550.1 @ TAIR		 +1 2e-85 257 124/190 (65%) Symbols: ATGGT-IB, GGB, PGGT-I | Prenyltransferase family protein | chr2:16501666-16504144 FORWARD LENGTH=375
BRACH PP3 Bradi2g03310.1.p +1 1e-122 351 165/190 (87%) pacid=32775578 transcript=Bradi2g03310.1 locus=Bradi2g03310 ID=Bradi2g03310.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (640 bp)

>HORVU3Hr1G013720.5 640 150831_barley_pseudomolecules
GAGGCGGAGGAGGCGGCGGCCGGGTTCGCGCGCGCGCGCCACGCGGCGTTCCTGGAGATG
ATGTCGTCCGAGCTCCCCGACGGCTACGCCACGCAGGAGGTCAACCACCTCACCCTCGCC
TACTTCGCCGTCGCCGGCCTCTCCCTCCTCCGGGAGCTCCACCGGGTTAACAAGGATCAA
ATTGCCAAATGGGTTTTGTCGTTTCAAGTACACCCTGAGGCAAACGACGACTTACATAAT
GGGCAATTTTTTGGATTCTGTGGCTCTAGAACAACTAAATTTCCCTCAAATTTGGTGAAG
GACCCTTGCCATAATGGTAGCCATCTAGCAAGCACTTATTCTGCTCTTGCTATATTGAAG
ATTGTAGGTTATGATGTACTAAACCTTGATAGCAAGGTTCTTCTAGCGTCGATGAAAAAA
CTCCAGCAATCAGATGGAAGCTTCATGCCTACTCATATTGGTGCGGAAACAGACCTACGC
TTTGTATACTGTGCAGCTGCGATCTGCTCAATGCTGAAAGACTGGTCAGGAATGGACAAG
GAAAAGGCCAAGGAATACATCCTTAATTGTCAGTCATATGACGGTGGCTTTGGCATGGTT
CCCGGTTCAGAATCTCATGGTAGGCAGTGCATTTCTTTAC