Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u18088	97.8	+	+	4377	-99	Partial-Overlap

Transcripts from Gene HORVU3Hr1G013720

Transcript	Length(bp)	Description
HORVU3Hr1G013720.1	1682	gene=HORVU3Hr1G013720 CDS=1-1398
HORVU3Hr1G013720.2	1690	gene=HORVU3Hr1G013720 CDS=1-1017
HORVU3Hr1G013720.3	1508	gene=HORVU3Hr1G013720 CDS=1-807
HORVU3Hr1G013720.4	1500	gene=HORVU3Hr1G013720 CDS=1-1113
HORVU3Hr1G013720.5	640	gene=HORVU3Hr1G013720 CDS=1-639
HORVU3Hr1G013720.6	1132	gene=HORVU3Hr1G013720 CDS=2-601

Exon Structure of HORVU3Hr1G013720

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os01g05680.1	+1	7e-116	343	158/189 (84%)	protein|geranylgeranyl transferase type-1 subunit beta, putative, expressed
TAIR PP10	AT2G39550 @ ARAPORT AT2G39550.1 @ TAIR	+1	2e-112	257	123/189 (65%)	Symbols: ATGGT-IB, GGB, PGGT-I | Prenyltransferase family protein | chr2:16501666-16504144 FORWARD LENGTH=375
BRACH PP3	Bradi2g03310.1.p	+1	8e-157	350	164/189 (87%)	pacid=32775578 transcript=Bradi2g03310.1 locus=Bradi2g03310 ID=Bradi2g03310.1.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons