- Transcript HORVU3Hr1G013720.4
- Transcript IDHORVU3Hr1G013720.4
- Gene IDHORVU3Hr1G013720
Barley RTD
Exon Structure of HORVU3Hr1G013720.4
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 30433440 | 30433135 | + |
| chr3H | 2 | 30434781 | 30434706 | + |
| chr3H | 3 | 30434918 | 30434860 | + |
| chr3H | 4 | 30435171 | 30435032 | + |
| chr3H | 5 | 30435776 | 30435721 | + |
| chr3H | 6 | 30435931 | 30435855 | + |
| chr3H | 7 | 30436066 | 30436021 | + |
| chr3H | 8 | 30436328 | 30436204 | + |
| chr3H | 9 | 30436515 | 30436448 | + |
| chr3H | 10 | 30437178 | 30436632 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g05680.1 | +1 | 7e-118 | 346 | 160/194 (82%) | protein|geranylgeranyl transferase type-1 subunit beta, putative, expressed |
| TAIR PP10 | AT2G39550 @ ARAPORT AT2G39550.1 @ TAIR |
+1 | 2e-136 | 398 | 213/372 (57%) | Symbols: ATGGT-IB, GGB, PGGT-I | Prenyltransferase family protein | chr2:16501666-16504144 FORWARD LENGTH=375 |
| BRACH PP3 | Bradi2g03310.1.p | +1 | 0.0 | 549 | 267/355 (75%) | pacid=32775578 transcript=Bradi2g03310.1 locus=Bradi2g03310 ID=Bradi2g03310.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1500 bp)
>HORVU3Hr1G013720.4 1500 150831_barley_pseudomolecules GACCGCCATCTCGTCCCCATCTCCCAAAGTCCCAAGCGCGTCAGGATTCGTGCTCCCGTA CCGGCCCCGACGAATCGGCGGCGACGCGGAGGCCGTCACTTCTCCTTCCACGGCGGCGAC CGGCCGGAGATGGGGGACCAGGAGGCGGAGGAGGCGGCGGCCGGGTTCGCGCGCGCGCGC CACGCGGCGTTCCTGGAGATGATGTCGTCCGAGCTCCCCGACGGCTACGCCACGCAGGAG GTCAACCACCTCACCCTCGCCTACTTCGCCGTCGCCGGCCTCTCCCTCCTCCGGGAGCTC CACCGGGTTAACAAGGATCAAATTGCCAAATGGGTTTTGTCGTTTCAAGTACACCCTGAG GCAAACGACGACTTACATAATGGGCAATTTTTTGGATTCTGTGGCTCTAGAACAACTAAA TTTCCCTCAAATTTGGTGAAGGACCCTTGCCATAATGGTAGCCATCTAGCAAGCACTTAT TCTGCTCTTGCTATATTGAAGATTGTAGGTTATGATGTACTAAACCTTGATAGCAAGGTT CTTCTAGCGTCGATGAAAAAACTCCAGCAATCAGATGGAAGCTTCATGCCTACTCATATT GGTGCGGAAACAGACCTACGCTTTGTATACTGTGCAGCTGCGATCTGCTCAATGCTGAAA GACTGGTCAGGAATGGACAAGGAAAAGGCCAAGGAATACATCCTTAATTGTCAGTCATAT GACGGTGGCTTTGGCATGGTTCCCGGTTCAGAATCTCATGGTGGGGGAACTTTCTGTGCT GTTGCGGCCCTATATCTAATGGGTTTCATTCAAGTCGATTTGGCATCGAACTTACGAGAG TCTGCGCCGATCGACGTACAATTGCTATTGGAGTGGTGTCTTCAGAGGCAAGCAGCAGAC GGGGGGTTTCAGGGCAGAAGAAACAAGCCAAGCGATACATGCTATGCTTTCTGGATCGGA GGCGTGTTGAAGATGATTGGCGCCTACCACTTGATCGACCACGCCGCTCTGCGGGAGTTT CTGCTCACCTGCCAGACACGTGTAATTATCCCAAACCAAAGCCTTTATCGACAACTCGTT CCGAGATTTCAACAAGATAATATAAAACCTTAAATCAAGTTTTCAAACAGGTCTACATCC ACGCTCCTTTCCTGACTCGTTTTCTTCTTCTGATTATTTGCTTGGACGACACAGTACGGA GGCTTCTCGAAGTTCCCCGACGACGGGCTCCCGGACATCTACCATTCGTACTACGGGCTC GCTGCCCTCTCGTTGCTGGGTGAGGAGAAGGAGGTCGAGCCGCTCTGCGCCGAGCTGGGG ATCATCGCCGCTGCGCTGTAGCTAGCCGAGGCACCGATCCGATCTTCCCCGTTGTACCCT CCTTGTAACTCACAGTTTCTCTGCGACCAACGGATGCTGTAAGACCGATCCACCATTACA GCGTGCGGCTGAAAACATGGAAGCGATTTTTTTGCATGAGGTTTCTTGATTGATCCGTGC