- Transcript HORVU3Hr1G007830.5
- Transcript IDHORVU3Hr1G007830.5
- Gene IDHORVU3Hr1G007830
Barley RTD
Exon Structure of HORVU3Hr1G007830.5
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 18482405 | 18482206 | - |
| chr3H | 2 | 18483197 | 18483139 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g19480.1 | +1 | 5e-34 | 123 | 59/74 (80%) | protein|SET domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g64460.4.p | +1 | 3e-34 | 123 | 58/74 (78%) | pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (259 bp)
>HORVU3Hr1G007830.5 259 150831_barley_pseudomolecules ATGAAGCTGTCGTCGGTTGATAAGATTCCTCCCTACACCACGTGGATCTTCCTGGACAAA AACCAAAGAATGGCCGATGATCAATCAATTGCTGGTAGGAGGAGAATTTACTATGATTCA GCTCGCAACGAGGCTCTAATCTGGAGTGAAAGTGATGAACAAATTGCACAACCTGAGGAA GAGAAGCATGTTTTCACTGAAGCAGAAGATCAGCTAATATGGTAATAATAGAATATATAT TGGCCAATTGAGATGCTTT