- Transcript HORVU3Hr1G007830.2
- Transcript IDHORVU3Hr1G007830.2
- Gene IDHORVU3Hr1G007830
Barley RTD
Exon Structure of HORVU3Hr1G007830.2
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 18479150 | 18478512 | - |
| chr3H | 2 | 18479916 | 18479746 | - |
| chr3H | 3 | 18480277 | 18480169 | - |
| chr3H | 4 | 18481341 | 18481201 | - |
| chr3H | 5 | 18481920 | 18481455 | - |
| chr3H | 6 | 18482410 | 18482244 | - |
| chr3H | 7 | 18483649 | 18483139 | - |
| chr3H | 8 | 18484134 | 18483774 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g19480.1 | +1 | 3e-43 | 107 | 69/165 (42%) | protein|SET domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g64460.4.p | +1 | 7e-49 | 119 | 77/168 (46%) | pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2565 bp)
>HORVU3Hr1G007830.2 2565 150831_barley_pseudomolecules GTCAAAAAACCCTATCGTCATCCTACCCCCCACACATCGCTACCCTATGCCGCCGTCATC ATCGCCGAGGGCATCCCCAGTCCCCGACCGCGGCCACCCGATCCCATGCCTGACCTTGGC GGCGCCGACACGTCCCCGATCGCGGTCTCCCCGCTCCCTCCCGATCGCGGCAGGACCGCC TCGTCCCCAACCGCGGCCGCGTCACCCTGTCAAAGAACGGTGACGCCTCACCCCGTCCCC GACCACGGCCGCCTCGCGTCGAGGAGCAGTAGGTGGTCGGCCTACGGCGGCTCGCACCAT CGCCATGGTGTCGTCCTCCTCCAAAGCCTCCTCCTCCTCCTCCCACCGGGATGGCCCCAT GATCAGTGGCTCGACGTGGGCACCTCCGCGCTCATGGCGCTCCACGGGAAGCTGACGCAG ATGAAGCGCCAAATCCAGCAGGCCTGCCTCACCTCCATGAGGATAAAGCACCGGCATCAT CTACGGAATTCCTTGTGAATTGTGAGTTTCGGGTCACTCAATGTGATCCTCCTGTTTTGA GCTTGTGTGCCTATGTTGTGTTTTGACAGGAGAAGCTGGAGGCAAACAGGAGGGCGTTGC AGAAGCACACCTGCGGCGTCGAGGGGCTCGGAGAGCAGCAATGTGTTGTCGCAGCTCGCC TCGGACGGCCAGTCCAGGATCATTGGGTGGAACCTGGCGAGAGGGTCGGGGGAGAGGAAG GTTGTGCATGTGCAGGAGGAGAACCTGTCGGCCGACGGGATGCTCGTGCTCTGCAGCTCC GGCAACGGCGCACAAACCATCGTTTTGCAGCTTATGAAGCTGTCGTCGGTTGATAAGATT CCTCCCTACACCACGTGGATCTTCCTGGACAACGCAGAAACCAAAGAATGGCCGATGATC AATCAATTGCTGGTAGGAGGAGAATTTACTATGATTCAGCTCGCAACGAGGCTCTAATCT GGAGTGAAAGTGATGAACAAATTGCACAACCTGAGGAAGAGAAGCATGTTTTCACTGAAG CAGAAGATCAGCTAATATGGTTCAACTTGATATTATGCCAGGCGAGAGACACATAGAGTT AGGGAACGGCCGAGCTCGCCTCCGAGGAAGAGAGATGATTGTCGTCCCTTGGTCGAGGAT GGAGCCGACACGCTGTGCCGCCACAGCTATTGAGGCTATCCGTCAAGTGTGGCCGGATTT GGGCATCTGGTGTTGTCACCTAGGCTGGTGTTTCTCCTCTATGCACGCTTGCTTTATCGT TGCCGGATGAATGCACTCGAGGAGGCGGCAGTGGATCCCTAGGTTTTTCGGTTTTTGAAA GAGAATTTTGTTTTTGCGATTTTCTACATGCGTTCCATCAGCAATTGAGAATCATGTGCA AGCCGTGAGATTTGGGAACCACTAGATTGTGACAGTGCAGGAAGTAAAATATGCGTCGGA GACGGCTATGAAGGCATGAACATGAACCAGAGGGCCGTGAGGGACATCAAGAATATGATC AGCATGTTCAGATTTTCACATGACTGATGCCCAGAGCTAGCAGGTCTCAGGACTGAGCTC GTGCCCATGCGGCAGAGCAAGGGATACTTATGGAACATATACGTTGTGTCAATGCATCGT TAGGCGAACATCTTTCTATTTTGCAGATGGTTATACGTTTGAAACATCAACTGGCCTGTC AAGAATGTGAGAGGCCCTCGGGAGTGAAAAAACTATCGTTTGAGATAGTTGTTGGATTGA ACAGCCGGAGCGTGGTGGCAAGGCAGCTAGAGACAAAAAGGGAATTGGTGAAAAAGCAAC TCGCACATCTATAGGTCTCTTGGAATCTCACATTTATCAATTTATGGAAAGGGGCATCCA TTGGCATTCTAATAATTTTGTTAGAGAACGGCATAGACTGAGGCAGCCGATGTGAACGAA CACCGGGTACCCATAAACAAGAGGAAAAAACAACACATGTACAACGACAACAAGGTTAGC TAAGAAAAAATCAGGCTGCCGGTGTCTATTAACCCAGGGCATGATCTTGGGACGTCCGGC TTCTTTCCAAAGCGAGATCTCATCCAACATCAAGTTGAAGACACTCCAAATGGTGGAACT TAAGTTGCGGACAATTCTGGTGTTTCGCTCCTTCCACGTGAACCACCAGATAGCCTGCAC TAAGTAGTTCCATCCCTTCTTCTTCGGGGCAGCAAGACTGGCAGCGGAACTTTCCACTCG ATCCGAGAGGCGGGTGGTGTCGCTGGAGGGGCCTAAAGTAGCCGAGGTTGCAGGTAGCAG CATGAGCCGCCAAATAGCCTGAAAAATAGGCATTGAGTGAGCAAAAGAATGTTGTCTTCA TCCGTTGAGCGACTCATGTAGTACACGGGATCAGGGGAGCAGTCCCTTTTCTGCACATTG TCCCCGGTATATGTTGGCTTGGCCTTCTACTGCCCTTTTAGTTATGTTACTGTCTAGAAA TATTTGTAGTAGTTTTAAGATTTGAAAGCTCATTTTTATTAACTTGCTGTGTATGTGATT GTGAACTACTTCCATATTTTAGAAATATTATAACGGAAAAGTTTC