Exon Structure of HORVU3Hr1G007830.1

ChromosomeExonStartStopDirection
chr3H11847915018478512-
chr3H21847991618479746-
chr3H31848028618480169-
chr3H41848134118481201-
chr3H51848192018481451-
chr3H61848240518482244-
chr3H71848364918483139-
chr3H81848413418483774-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g19480.1 +1 3e-51 195 112/219 (51%) protein|SET domain containing protein, expressed
TAIR PP10None-----
BRACH PP3 Bradi1g64460.4.p +1 7e-58 213 122/223 (55%) pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2573 bp)

>HORVU3Hr1G007830.1 2573 150831_barley_pseudomolecules
GTCAAAAAACCCTATCGTCATCCTACCCCCCACACATCGCTACCCTATGCCGCCGTCATC
ATCGCCGAGGGCATCCCCAGTCCCCGACCGCGGCCACCCGATCCCATGCCTGACCTTGGC
GGCGCCGACACGTCCCCGATCGCGGTCTCCCCGCTCCCTCCCGATCGCGGCAGGACCGCC
TCGTCCCCAACCGCGGCCGCGTCACCCTGTCAAAGAACGGTGACGCCTCACCCCGTCCCC
GACCACGGCCGCCTCGCGTCGAGGAGCAGTAGGTGGTCGGCCTACGGCGGCTCGCACCAT
CGCCATGGTGTCGTCCTCCTCCAAAGCCTCCTCCTCCTCCTCCCACCGGGATGGCCCCAT
GATCAGTGGCTCGACGTGGGCACCTCCGCGCTCATGGCGCTCCACGGGAAGCTGACGCAG
ATGAAGCGCCAAATCCAGCAGGCCTGCCTCACCTCCATGAGGATAAAGCACCGGCATCAT
CTACGGAATTCCTTGTGAATTGTGAGTTTCGGGTCACTCAATGTGATCCTCCTGTTTTGA
GCTTGTGTGCCTATGTTGTGTTTTGACAGGAGAAGCTGGAGGCAAACAGGAGGGCGTTGC
AGAAGCACACCTGCGGCGTCGAGGGGCTCGGAGAGCAGCAATGTGTTGTCGCAGCTCGCC
TCGGACGGCCAGTCCAGGATCATTGGGTGGAACCTGGCGAGAGGGTCGGGGGAGAGGAAG
GTTGTGCATGTGCAGGAGGAGAACCTGTCGGCCGACGGGATGCTCGTGCTCTGCAGCTCC
GGCAACGGCGCACAAACCATCGTTTTGCAGCTTATGAAGCTGTCGTCGGTTGATAAGATT
CCTCCCTACACCACGTGGATCTTCCTGGACAAAAACCAAAGAATGGCCGATGATCAATCA
ATTGCTGGTAGGAGGAGAATTTACTATGATTCAGCTCGCAACGAGGCTCTAATCTGGAGT
GAAAGTGATGAACAAATTGCACAACCTGAGGAAGAGAAGCATGTTTTCACTGAAGCAGAA
GATCAGCTAATATGGTTCAACTTGATATTATGCCAGGCGAGAGACACATAGAGTTAGGGA
ACGGCCGAGCTCGCCTCCGAGGAAGAGAGATGATTGTCGTCCCTTGGTCGAGGATGGAGC
CGACACGCTGTGCCGCCACAGCTATTGAGGCTATCCGTCAAGTGTGGCCGGATTTGGGCA
TCTGGTGTTGTCACCTAGGCTGGTGTTTCTCCTCTATGCACGCTTGCTTTATCGTTGCCG
GATGAATGCACTCGAGGAGGCGGCAGTGGATCCCTAGGTTTTTCGGTTTTTGAAAGAGAA
TTTTGTTTTTGCGATTTTCTACATGCGTTCCATCAGCAATTGAGAATCATGTGCAAGCCG
TGAGATTTGGGAACCACTAGATTGTGACAGTGCAGGAAGTAAAATATGCGTCGGAGACGG
CTATGAAGGCATGAACATGAACCAGAGGGCCGTGAGGGACATCAAGAATATGATCAGCAT
GTTTGTTCAGATTTTCACATGACTGATGCCCAGAGCTAGCAGGTCTCAGGACTGAGCTCG
TGCCCATGCGGCAGAGCAAGGGATACTTATGGAACATATACGTTGTGTCAATGCATCGTT
AGGCGAACATCTTTCTATTTTGCAGCAAGTGCAGATGGTTATACGTTTGAAACATCAACT
GGCCTGTCAAGAATGTGAGAGGCCCTCGGGAGTGAAAAAACTATCGTTTGAGATAGTTGT
TGGATTGAACAGCCGGAGCGTGGTGGCAAGGCAGCTAGAGACAAAAAGGGAATTGGTGAA
AAAGCAACTCGCACATCTATAGGTCTCTTGGAATCTCACATTTATCAATTTATGGAAAGG
GGCATCCATTGGCATTCTAATAATTTTGTTAGAGAACGGCATAGACTGAGGCAGCCGATG
TGAACGAACACCGGGTACCCATAAACAAGAGGAAAAAACAACACATGTACAACGACAACA
AGGTTAGCTAAGAAAAAATCAGGCTGCCGGTGTCTATTAACCCAGGGCATGATCTTGGGA
CGTCCGGCTTCTTTCCAAAGCGAGATCTCATCCAACATCAAGTTGAAGACACTCCAAATG
GTGGAACTTAAGTTGCGGACAATTCTGGTGTTTCGCTCCTTCCACGTGAACCACCAGATA
GCCTGCACTAAGTAGTTCCATCCCTTCTTCTTCGGGGCAGCAAGACTGGCAGCGGAACTT
TCCACTCGATCCGAGAGGCGGGTGGTGTCGCTGGAGGGGCCTAAAGTAGCCGAGGTTGCA
GGTAGCAGCATGAGCCGCCAAATAGCCTGAAAAATAGGCATTGAGTGAGCAAAAGAATGT
TGTCTTCATCCGTTGAGCGACTCATGTAGTACACGGGATCAGGGGAGCAGTCCCTTTTCT
GCACATTGTCCCCGGTATATGTTGGCTTGGCCTTCTACTGCCCTTTTAGTTATGTTACTG
TCTAGAAATATTTGTAGTAGTTTTAAGATTTGAAAGCTCATTTTTATTAACTTGCTGTGT
ATGTGATTGTGAACTACTTCCATATTTTAGAAATATTATAACGGAAAAGTTTC