Transcript Data
Barley RTD
Links



Exon Structure of HORVU2Hr1G122180.9

ChromosomeExonStartStopDirection
chr2H1752635679752635624-
chr2H2752635861752635766-
chr2H3752636131752636029-
chr2H4752636358752636210-
chr2H5752636704752636676-
chr2H6752637051752636874-
chr2H7752637469752637389-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os12g16650.2 +1 4e-95 295 139/206 (67%) protein|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed
TAIR PP10 AT3G23510 @ ARAPORT
AT3G23510.1 @ TAIR		 +1 1e-80 258 119/206 (58%) Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867
BRACH PP3 Bradi5g02490.2.p +1 8e-110 335 157/207 (76%) pacid=32809830 transcript=Bradi5g02490.2 locus=Bradi5g02490 ID=Bradi5g02490.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (692 bp)

>HORVU2Hr1G122180.9 692 150831_barley_pseudomolecules
TCAGCAGCATGGAGTGCGTGGAATTTCCTTGGGACAACTAGTAGGGGTTTTTCTATTACT
TACTGGCTAAACCAAATTCAGAAATTTGAATCGGGCAGGCCTTTCCTGGTGACACTCAAT
CCCCCTTGTGTTCCGGATCATGTACTACTTAAATGGAATACAAGCCTTCCTGTTCCGTCT
GTGGCCGCGGCGAAGGCTTATCTTCAGCTTGATCAGATCCAGGGAAAGAGGGGAATATGG
TTCTGTGGGGCATATCAAGGTCATGGCTTCCATGAAGACGGATTAAAGTCTGGGAAAGCA
GCGGCTCAAGGTTTGCTTGGAAAGAAATGTGAGCTTCTGCTGAACCCAAAGAATATGATT
CCATCATGGATTGAGGCTGGGGCACGCCTTCTAGTTGCAAGATTTTTCAACCAATACATA
TCCATTGGTAACTTGATATTGGTCGAAGAAGGAGGTAGTGTGTTCAGCTTTGGTAAAGCT
TGCGACAAATGCCGTGTAAAATCTGTCATCCAAGTTCATGACCCCTTGTTCTATTGGAAG
GTTGCAATAGAAGGAGGCATGGGCTTGGCAGAATCCTATATTGACGGTTGTTTCTCTGTT
CTTGACAAGAGAGAAGGCCTTCTAAATCTTATCCTGATTCTCATTGCTAACAGAGACGAG
CGTAGGAACCGCCGCATTGCCAGAAAAGGGTT