Gene Data
Barley RTD
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Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u1639394.7--11296-631Containing




Transcripts from Gene HORVU2Hr1G122180

TranscriptLength(bp)Description
HORVU2Hr1G122180.11284gene=HORVU2Hr1G122180 CDS=338-799
HORVU2Hr1G122180.21671gene=HORVU2Hr1G122180 CDS=407-1186
HORVU2Hr1G122180.31606gene=HORVU2Hr1G122180 CDS=849-1307
HORVU2Hr1G122180.42633gene=HORVU2Hr1G122180 CDS=29-2368
HORVU2Hr1G122180.52890gene=HORVU2Hr1G122180 CDS=34-2625
HORVU2Hr1G122180.62394gene=HORVU2Hr1G122180 CDS=1-2394
HORVU2Hr1G122180.72582gene=HORVU2Hr1G122180 CDS=1-2571
HORVU2Hr1G122180.81604gene=HORVU2Hr1G122180 CDS=186-671
HORVU2Hr1G122180.9692gene=HORVU2Hr1G122180 CDS=1-690
HORVU2Hr1G122180.10678gene=HORVU2Hr1G122180 CDS=1-633



Exon Structure of HORVU2Hr1G122180


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os12g16650.1 +1 0.0 1034 529/798 (66%) protein|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed
TAIR PP10 AT3G23510 @ ARAPORT
AT3G23510.1 @ TAIR		 +1 0.0 956 489/836 (58%) Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867
BRACH PP3 Bradi5g02490.1.p +1 0.0 1167 591/861 (69%) pacid=32809829 transcript=Bradi5g02490.1 locus=Bradi5g02490 ID=Bradi5g02490.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons