- Transcript HORVU2Hr1G122180.8
- Transcript IDHORVU2Hr1G122180.8
- Gene IDHORVU2Hr1G122180
Barley RTD
Exon Structure of HORVU2Hr1G122180.8
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 752634002 | 752633898 | - |
| chr2H | 2 | 752634160 | 752634090 | - |
| chr2H | 3 | 752634845 | 752634684 | - |
| chr2H | 4 | 752635015 | 752634959 | - |
| chr2H | 5 | 752635164 | 752635102 | - |
| chr2H | 6 | 752635679 | 752635387 | - |
| chr2H | 7 | 752636131 | 752635766 | - |
| chr2H | 8 | 752636358 | 752636210 | - |
| chr2H | 9 | 752636719 | 752636676 | - |
| chr2H | 10 | 752637052 | 752636885 | - |
| chr2H | 11 | 752637514 | 752637389 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g29220.1 | +1 | 2e-95 | 298 | 144/193 (75%) | protein|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed |
| TAIR PP10 | AT3G23470 @ ARAPORT AT3G23470.1 @ TAIR |
+1 | 2e-76 | 248 | 116/196 (59%) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8415565-8418120 FORWARD LENGTH=461 |
| BRACH PP3 | Bradi5g02490.2.p | +1 | 5e-90 | 295 | 141/196 (72%) | pacid=32809830 transcript=Bradi5g02490.2 locus=Bradi5g02490 ID=Bradi5g02490.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1604 bp)
>HORVU2Hr1G122180.8 1604 150831_barley_pseudomolecules AGAGATATATACCTCCACTGCGATCAAAATTTGATGCCCCGAAAATCAGCAGCATGGAGT GCGTGGAATTTCCTTGGGACAACTAGTAGGGGTTTTTCTATTACTTACTGGCTAAACCAA ATTCAGGAAATTTGAATCGGGCAGGCCTTTCCTGGTGACACTCAATCCCCCTTGTGTTCC GGATCATGTACTACTTAAATGGAATACAAGCCTTCCTGTTCCGTCTGTGGCCGCGGCGAA GGCTTATCTTCAGCTTGATCAGATCCAGGGAAAGAGGGGAATATGGTTCTGTGGTGCATT GTATCGTAGGTCATGGCTTCCATGAAGACGGATTAAAGTCTGGGAAAGCAGCGGCTCAAG GTTTGCTTGGAAAGAAATGTGAGCTTCTGCTGAACCCAAAGAATATGATTCCATCATGGA TTGAGGCTGGGGCACGCCTTCTAGTTGCAAGATTTTTCAACCAATACATATCCATTGGTA ACTTGATATTGGTCGAAGAAGGAGGTAGTGTGTTCAGCTTTGGTAAAGCTTGCGACAAAT GCCGTGTAAAATCTGTCATCCAAGTTCATGACCCCTTGTTCTATTGGAAGGTTATCTTCT CTTTTCTTATTCTGACTACACATGCATTTAAAAAAATTAAGAGTGGTGATGTGCCCATGC ATGATTCATAATTTCCTATATACTCCACTGCATTTGCTTTGTACAACTTTTTCATTCGAA CCACATGTGTGTACCCTGGCTCTCTCATGGCTTTCAGGTTGCAATAGAAGGAGGCATGGG CTTGGCAGAATCCTATATTGACGGTTGTTTCTCTGTTCTTGACAAGAGAGAAGGCCTTCT AAATCTTATCCTGATTCTCATTGCTAACAGAGACGAGCGTAGGAACCGCCGCATTGCCAG AAAAGGGTTCTGAAACCTTCAATTGTCCACTAGATTCCTATGAATTGTTTGATAAAAATG AAGTAGTACCTATGAGTATGCGTTTGTGATTAATCCTGTACATGCTGTTTTTCGGTTTGC AGGTTTTGGTTGTCACCCTTCCATGTAATAGCTCAATTGGCATATGCTAAACACTTTTTG CGCCAGGCAACAAGGAAGAACACTGCAACACAAACTCGTCGAAACATCTCTGAGCACTAT GATCTTAGTAACGACTTTTTTTCGCTTTTTCTGGATAAATCGATGACTTACTCCTGTGCA GTTTTCAAGGAGAACGAAAGCTTAGAAGCAGCCCAACAACGTAAACTTAGCCTTCTAATC AACAAGGCTAAAGTCAAGAGGGAGCATCATGTTCTTGATATCGGTAGCGGCTGGGGAAGT TTAGCAATAGAAACAGTTAAGCAAACTGGCTGCAAATACACTGGAGTCACTTTATCGGCG GAGCAGCATAAATACGCAGAAAGAAAAGTAAGAGAAGCTGGCTTAGAGGACCGCATAAAT TTTCTGCTGTGCGACTACCGTAAAATACCACCTTTTAAGTATGACGCAATCATAAGCTGT GGTATGATTGAACATGTTGGCCATGAATACATGGACGAATTTTTTGCTTGCTGTGAGTCT TACTTGGCTGAAGATGGGATATTGGTCCTCCAGGTTAGTGCATT