- Transcript HORVU2Hr1G122180.5
- Transcript IDHORVU2Hr1G122180.5
- Gene IDHORVU2Hr1G122180
Barley RTD
Exon Structure of HORVU2Hr1G122180.5
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 752632673 | 752632364 | - |
| chr2H | 2 | 752633100 | 752632995 | - |
| chr2H | 3 | 752633394 | 752633314 | - |
| chr2H | 4 | 752633633 | 752633497 | - |
| chr2H | 5 | 752634002 | 752633909 | - |
| chr2H | 6 | 752634160 | 752634090 | - |
| chr2H | 7 | 752634845 | 752634684 | - |
| chr2H | 8 | 752635015 | 752634959 | - |
| chr2H | 9 | 752635164 | 752635102 | - |
| chr2H | 10 | 752635510 | 752635387 | - |
| chr2H | 11 | 752635679 | 752635627 | - |
| chr2H | 12 | 752635861 | 752635766 | - |
| chr2H | 13 | 752636131 | 752636029 | - |
| chr2H | 14 | 752636358 | 752636210 | - |
| chr2H | 15 | 752636704 | 752636676 | - |
| chr2H | 16 | 752637051 | 752636874 | - |
| chr2H | 17 | 752637512 | 752637389 | - |
| chr2H | 18 | 752637747 | 752637597 | - |
| chr2H | 19 | 752637930 | 752637852 | - |
| chr2H | 20 | 752638100 | 752638041 | - |
| chr2H | 21 | 752638282 | 752638181 | - |
| chr2H | 22 | 752638779 | 752638674 | - |
| chr2H | 23 | 752639126 | 752638900 | - |
| chr2H | 24 | 752643439 | 752643212 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os12g16650.1 | +1 | 0.0 | 1034 | 529/798 (66%) | protein|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed |
| TAIR PP10 | AT3G23510 @ ARAPORT AT3G23510.1 @ TAIR |
+1 | 0.0 | 956 | 489/836 (58%) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867 |
| BRACH PP3 | Bradi5g02490.1.p | +1 | 0.0 | 1167 | 591/861 (69%) | pacid=32809829 transcript=Bradi5g02490.1 locus=Bradi5g02490 ID=Bradi5g02490.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2890 bp)
>HORVU2Hr1G122180.5 2890 150831_barley_pseudomolecules AGAGAGCAGAGCGGAGCATAGACACCGAGAAGAATGAGGGTGGCGGTGGTTGGCGGCGGG GTGAGCGGGCTGGCGGCGGCGCATGAGCTCGCCGCCAGCGGGGGAGACGGCGTGCGAGTG ACCCTGTACGAGGAGGAGGCCAGCCTCGGCGGGCACGCCAGGACGGTGGCCGTCGATGAC GGCGCCGGCTGCGTCAAGCTCGACCTCGGCTTCATGGTCTTCAACCAGGTAACATATCCG CAAATGATGGAATGGTTAGAAGGGCTCGGGGTTGAGATGGAGAGGTCAGACATGTCTTTC TCTGTGAGCACACAATCTAAAGGAGGCGGTGGAGGATGTGAGTGGGGAAATGGTAACGGT ATATCGAGCCTCTTGGCGCAAAAAACCAACATACTGAAACCCAGTTTTTGGCACATGGTC TGTGAGATACTCAAGTTCAAGAACAATGCCCTGACGTACCTGGAGGACCATGAACGTAAC CCTGATCTGGATCGTAATGAGACACTGGGGCAGTTCATTCAGTCGCATGGATATTCCCTA TCGTTTCAAGAGGCTTATCTTATTCCAGTCTGCACAGGCACGTGGTCATGTTCATCACAA GATGTTTTGAGCCTGTCTGCTTTCTTGGTGCTGTCATTTTGCCGTAACCATGGCCTTCTT CAGCTGTTTCGTCACTCCCAGTTGCCCACTGTCAAGCCTAGTTCGCAGTCCTATGTAAAC AAGGTAAAAGGAGAATTGGAGAGCATTGGCTGTCGAATTAAAACCAGTTGTCGGGTCAAA TCTGTTTCAAGTCTTGATGGAGCTGGCTACAGAGTCTTGGAGAATGATGGTTCAGTGGAA ACATACGACAGTGTCATCTTTGGGGTCCATGCATCCAATGCTCTCAAATTATTAGGAGCT GAAGCATCACATCACGAACGAAGAATTCTAGGTGCCTGTCAGTATGTCCAAAGAGATATA TACCTCCACTGCGATCAAAATTTGATGCCCCGAAAATCAGCAGCATGGAGTGCGTGGAAT TTCCTTGGGACAACTAGTAGGGGTTTTTCTATTACTTACTGGCTAAACCAAATTCAGAAA TTTGAATCGGGCAGGCCTTTCCTGGTGACACTCAATCCCCCTTGTGTTCCGGATCATGTA CTACTTAAATGGAATACAAGCCTTCCTGTTCCGTCTGTGGCCGCGGCGAAGGCTTATCTT CAGCTTGATCAGATCCAGGGAAAGAGGGGAATATGGTTCTGTGGGGCATATCAAGGTCAT GGCTTCCATGAAGACGGATTAAAGTCTGGGAAAGCAGCGGCTCAAGGTTTGCTTGGAAAG AAATGTGAGCTTCTGCTGAACCCAAAGAATATGATTCCATCATGGATTGAGGCTGGGGCA CGCCTTCTAGTTGCAAGATTTTTCAACCAATACATATCCATTGGTAACTTGATATTGGTC GAAGAAGGAGGTAGTGTGTTCAGCTTTGGTAAAGCTTGCGACAAATGCCGTGTAAAATCT GTCATCCAAGTTCATGACCCCTTGTTCTATTGGAAGGTTGCAATAGAAGGAGGCATGGGC TTGGCAGAATCCTATATTGACGGTTGTTTCTCTGTTCTTGACAAGAGAGAAGGCCTTCTA AATCTTATCCTGATTCTCATTGCTAACAGAGACGAGCGTAGGAACCGCCGCATTGCCAGA AAAGGGTTTTGGTTGTCACCCTTCCATGTAATAGCTCAATTGGCATATGCTAAACACTTT TTGCGCCAGGCAACAAGGAAGAACACTGCAACACAAACTCGTCGAAACATCTCTGAGCAC TATGATCTTAGTAACGACTTTTTTTCGCTTTTTCTGGATAAATCGATGACTTACTCCTGT GCAGTTTTCAAGGAGAACGAAAGCTTAGAAGCAGCCCAACAACGTAAACTTAGCCTTCTA ATCAACAAGGCTAAAGTCAAGAGGGAGCATCATGTTCTTGATATCGGTAGCGGCTGGGGA AGTTTAGCAATAGAAACAGTTAAGCAAACTGGCTGCAAATACACTGGAGTCACTTTATCG GCGGAGCAGCATAAATACGCAGAAAGAAAAGTAAGAGAAGCTGGCTTAGAGGACCGCATA AATTTTCTGCTGTGCGACTACCGTAAAATACCACCTTTTAAGTATGACGCAATCATAAGC TGTGGTATGATTGAACATGTTGGCCATGAATACATGGACGAATTTTTTGCTTGCTGTGAG TCTTACTTGGCTGAAGATGGGATATTGGTCCTCCAGTTCATCTCAGTTCCAGAGGAACGG TACGAGCAATACAGAAAAAGGCCAGACTTCATAAAAGAGTACATATTCCCTGGTGGTTGC CTTCCTTCTTTGGCCCGTATAATGTCTGCCATGACCGCGTCATCAAGGTTCTGCATAGAG CATGTCGAGAATATTGGGCCCAATTACTACACAACTCTGATGCACTGGAGGGACAACTTC ATGGCCAACAGAGACCAAGTTTTGGCCCTGGGCTTTGATGAAAGGTTCCTCCGTATATGG GAGTACTACCTCATATTCTCTGCGGCTGGTTTCAAGTCACGAGCAATTGGAGATTACCAG GTTGTTTTCTCTCGTCCAGGCAATCGTCGTCTAGGCCAGCCTTGATGGCCGGAGACAACA TATCCTTCTCCGTTCAGCGGCCGAATGGTTACTTGTCAGTACCGTACGAGATTTTAATAA GTCAGTCCTGGAATGATTCGCTCATGCCGGAATCCTACTCAGGTGGTTTGGTGATCTATC TTGTTGTTTAACCATGCAATGGTTAGTTTTTCGTGGGAGTGTCTTGTTATCCATCAATTA ACTAGAATTTTGAGAATTGTATGTAAGGAACTGGTTTGTTTGCTTTAATATCTATGAGGA AGAGTTGATG