- Transcript HORVU2Hr1G122180.3
- Transcript IDHORVU2Hr1G122180.3
- Gene IDHORVU2Hr1G122180
Barley RTD
Exon Structure of HORVU2Hr1G122180.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 752632673 | 752632330 | - |
| chr2H | 2 | 752633100 | 752632995 | - |
| chr2H | 3 | 752633394 | 752633314 | - |
| chr2H | 4 | 752633633 | 752633497 | - |
| chr2H | 5 | 752634002 | 752633909 | - |
| chr2H | 6 | 752634160 | 752634090 | - |
| chr2H | 7 | 752634845 | 752634684 | - |
| chr2H | 8 | 752635164 | 752634959 | - |
| chr2H | 9 | 752635679 | 752635387 | - |
| chr2H | 10 | 752635877 | 752635766 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g29220.1 | +3 | 3e-135 | 401 | 184/248 (74%) | protein|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed |
| TAIR PP10 | AT3G23510 @ ARAPORT AT3G23510.1 @ TAIR |
+3 | 5e-114 | 345 | 158/245 (64%) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867 |
| BRACH PP3 | Bradi5g02490.1.p | +3 | 3e-132 | 392 | 183/260 (70%) | pacid=32809829 transcript=Bradi5g02490.1 locus=Bradi5g02490 ID=Bradi5g02490.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1606 bp)
>HORVU2Hr1G122180.3 1606 150831_barley_pseudomolecules CTCTCATGGCTTTCAGGTTGCAATAGAAGGAGGCATGGGCTTGGCAGAATCCTATATTGA CGGTTGTTTCTCTGTTCTTGACAAGAGAGAAGGCCTTCTAAATCTTATCCTGATTCTCAT TGCTAACAGAGACGAGCGTAGGAACCGCCGCATTGCCAGAAAAGGGTTCTGAAACCTTCA ATTGTCCACTAGATTCCTATGAATTGTTTGATAAAAATGAAGTAGTACCTATGAGTATGC GTTTGTGATTAATCCTGTACATGCTGTTTTTCGGTTTGCAGGTTTTGGTTGTCACCCTTC CATGTAATAGCTCAATTGGCATATGCTAAACACTTTTTGCGCCAGGCAACAAGGAAGAAC ACTGCAACACAAACTCGTCGAAACATCTCTGAGCACTATGATCTTAGTAACGACTTTTTT TCGCTTTTTCTGGATAAATCGATGACTTACTCCTGTGCAGTTTTCAAGGTTTGTAAATCC TCTGATTTTCTTCGATGGCTTTTAGATTATGCAGAGTAGTTTTATTAATTCATGGACTAA GATTAAATTGCTAGGAGAACGAAAGCTTAGAAGCAGCCCAACAACGTAAACTTAGCCTTC TAATCAACAAGGCTAAAGTCAAGAGGGAGCATCATGTTCTTGATATCGGTAGCGGCTGGG GAAGTTTAGCAATAGAAACAGTTAAGCAAACTGGCTGCAAATACACTGGAGTCACTTTAT CGGCGGAGCAGCATAAATACGCAGAAAGAAAAGTAAGAGAAGCTGGCTTAGAGGACCGCA TAAATTTTCTGCTGTGCGACTACCGTAAAATACCACCTTTTAAGTATGACGCAATCATAA GCTGTGGTATGATTGAACATGTTGGCCATGAATACATGGACGAATTTTTTGCTTGCTGTG AGTCTTACTTGGCTGAAGATGGGATATTGGTCCTCCAGTTCATCTCAGTTCCAGAGGAAC GGTACGAGCAATACAGAAAAAGGCCAGACTTCATAAAAGAGTACATATTCCCTGGTGGTT GCCTTCCTTCTTTGGCCCGTATAATGTCTGCCATGACCGCGTCATCAAGGTTCTGCATAG AGCATGTCGAGAATATTGGGCCCAATTACTACACAACTCTGATGCACTGGAGGGACAACT TCATGGCCAACAGAGACCAAGTTTTGGCCCTGGGCTTTGATGAAAGGTTCCTCCGTATAT GGGAGTACTACCTCATATTCTCTGCGGCTGGTTTCAAGTCACGAGCAATTGGAGATTACC AGGTTGTTTTCTCTCGTCCAGGCAATCGTCGTCTAGGCCAGCCTTGATGGCCGGAGACAA CATATCCTTCTCCGTTCAGCGGCCGAATGGTTACTTGTCAGTACCGTACGAGATTTTAAT AAGTCAGTCCTGGAATGATTCGCTCATGCCGGAATCCTACTCAGGTGGTTTGGTGATCTA TCTTGTTGTTTAACCATGCAATGGTTAGTTTTTCGTGGGAGTGTCTTGTTATCCATCAAT TAACTAGAATTTTGAGAATTGTATGTAAGGAACTGGTTTGTTTGCTTTAATATCTATGAG GAAGAGTTGATGTCCTTGCTTGTAGTTTCTCATGATCTGATCTATT