Transcript Data
Barley RTD
Links



Exon Structure of HORVU2Hr1G122180.10

ChromosomeExonStartStopDirection
chr2H1752636131752635903-
chr2H2752636358752636210-
chr2H3752636704752636676-
chr2H4752637051752636874-
chr2H5752637481752637389-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os12g16650.2 +1 2e-82 262 125/185 (68%) protein|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed
TAIR PP10 AT3G23510 @ ARAPORT
AT3G23510.1 @ TAIR		 +1 1e-74 242 111/187 (59%) Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867
BRACH PP3 Bradi5g02490.1.p +1 7e-101 312 146/186 (78%) pacid=32809829 transcript=Bradi5g02490.1 locus=Bradi5g02490 ID=Bradi5g02490.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (678 bp)

>HORVU2Hr1G122180.10 678 150831_barley_pseudomolecules
ATGCCCCGAAAATCAGCAGCATGGAGTGCGTGGAATTTCCTTGGGACAACTAGTAGGGGT
TTTTCTATTACTTACTGGCTAAACCAAATTCAGAAATTTGAATCGGGCAGGCCTTTCCTG
GTGACACTCAATCCCCCTTGTGTTCCGGATCATGTACTACTTAAATGGAATACAAGCCTT
CCTGTTCCGTCTGTGGCCGCGGCGAAGGCTTATCTTCAGCTTGATCAGATCCAGGGAAAG
AGGGGAATATGGTTCTGTGGGGCATATCAAGGTCATGGCTTCCATGAAGACGGATTAAAG
TCTGGGAAAGCAGCGGCTCAAGGTTTGCTTGGAAAGAAATGTGAGCTTCTGCTGAACCCA
AAGAATATGATTCCATCATGGATTGAGGCTGGGGCACGCCTTCTAGTTGCAAGATTTTTC
AACCAATACATATCCATTGGTAACTTGATATTGGTCGAAGAAGGAGGTAGTGTGTTCAGC
TTTGGTAAAGCTTGCGACAAATGCCGTGTAAAATCTGTCATCCAAGTTCATGACCCCTTG
TTCTATTGGAAGGTTATCTTCTCTTTTCTTATTCTGACTACACATGCATTTAAAAAAATT
AAGAGTGGTGATGTGCCCATGCATGATTCATAATTTCCTATATACTCCACTGCATTTGCT
TTGTACAACTTTTTCATT