- Transcript HORVU2Hr1G122180.1
- Transcript IDHORVU2Hr1G122180.1
- Gene IDHORVU2Hr1G122180
Barley RTD
Exon Structure of HORVU2Hr1G122180.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 752632673 | 752632144 | - |
| chr2H | 2 | 752633100 | 752632995 | - |
| chr2H | 3 | 752633404 | 752633314 | - |
| chr2H | 4 | 752633636 | 752633507 | - |
| chr2H | 5 | 752634002 | 752633909 | - |
| chr2H | 6 | 752634160 | 752634090 | - |
| chr2H | 7 | 752634845 | 752634684 | - |
| chr2H | 8 | 752635058 | 752634959 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g29220.1 | +2 | 6e-132 | 389 | 182/249 (73%) | protein|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed |
| TAIR PP10 | AT3G23510 @ ARAPORT AT3G23510.1 @ TAIR |
+2 | 2e-106 | 334 | 156/246 (63%) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867 |
| BRACH PP3 | Bradi5g02490.1.p | +2 | 3e-124 | 381 | 181/261 (69%) | pacid=32809829 transcript=Bradi5g02490.1 locus=Bradi5g02490 ID=Bradi5g02490.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1284 bp)
>HORVU2Hr1G122180.1 1284 150831_barley_pseudomolecules CAGAGTAGTTTTATTAATTCATGGACTAAGATTAAATTGCTAGGAGAACGAAAGCTTAGA AGCAGCCCAACAACGTAAACTTAGCCTTCTAATCAACAAGGCTAAAGTCAAGAGGGAGCA TCATGTTCTTGATATCGGTAGCGGCTGGGGAAGTTTAGCAATAGAAACAGTTAAGCAAAC TGGCTGCAAATACACTGGAGTCACTTTATCGGCGGAGCAGCATAAATACGCAGAAAGAAA AGTAAGAGAAGCTGGCTTAGAGGACCGCATAAATTTTCTGCTGTGCGACTACCGTAAAAT ACCACCTTTTAAGTATGACGCAATCATAAGCTGTGGTATGATTGAACATGTTGGCCATGA ATACATGGACGAATTTTTTGCTTGCTGTGAGTCTTACTTGGCTGAAGATGGGATATTGGT CCTCCAGCAGTTCATCTCAGTTCCAGAGGAACGGTACGAGCAATACAGAAAAAGGCCAGA CTTCATAAAAGAGTACATATTCCCTGGTGGTTGCCTTCCTTCTTTGGCCCGTATAATGTC TGCCATGACCGCGTCATCTGGGTGTAGCATAGAGCATGTCGAGAATATTGGGCCCAATTA CTACACAACTCTGATGCACTGGAGGGACAACTTCATGGCCAACAGAGACCAAGTTTTGGC CCTGGGCTTTGATGAAAGGTTCCTCCGTATATGGGAGTACTACCTCATATTCTCTGCGGC TGGTTTCAAGTCACGAGCAATTGGAGATTACCAGGTTGTTTTCTCTCGTCCAGGCAATCG TCGTCTAGGCCAGCCTTGATGGCCGGAGACAACATATCCTTCTCCGTTCAGCGGCCGAAT GGTTACTTGTCAGTACCGTACGAGATTTTAATAAGTCAGTCCTGGAATGATTCGCTCATG CCGGAATCCTACTCAGGTGGTTTGGTGATCTATCTTGTTGTTTAACCATGCAATGGTTAG TTTTTCGTGGGAGTGTCTTGTTATCCATCAATTAACTAGAATTTTGAGAATTGTATGTAA GGAACTGGTTTGTTTGCTTTAATATCTATGAGGAAGAGTTGATGTCCTTGCTTGTAGTTT CTCATGATCTGATCTATTCGGTGTTTGCCGTTTTCAATGCTTGCTTGCGAAGAGAATCAA TATATGTTCCTGAGTATCATGTTTCACCAATGACTGAGGAGGACTTTTGCTAACAGAAAA GATGAGATCTCTTTGGCTAGTTTTTGTTAAAGGGGATGGCAGCAGTAAATACCTTCGTCC TTCCTCCATGTTGGAATCAAGAAG