- Transcript HORVU2Hr1G122160.4
- Transcript IDHORVU2Hr1G122160.4
- Gene IDHORVU2Hr1G122160
Barley RTD
Exon Structure of HORVU2Hr1G122160.4
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 752589725 | 752589697 | + |
| chr2H | 2 | 752590240 | 752590063 | + |
| chr2H | 3 | 752590438 | 752590410 | + |
| chr2H | 4 | 752590913 | 752590765 | + |
| chr2H | 5 | 752591094 | 752590992 | + |
| chr2H | 6 | 752591357 | 752591262 | + |
| chr2H | 7 | 752591736 | 752591444 | + |
| chr2H | 8 | 752592021 | 752591959 | + |
| chr2H | 9 | 752592164 | 752592108 | + |
| chr2H | 10 | 752592439 | 752592278 | + |
| chr2H | 11 | 752593033 | 752592963 | + |
| chr2H | 12 | 752593214 | 752593121 | + |
| chr2H | 13 | 752593626 | 752593490 | + |
| chr2H | 14 | 752593809 | 752593729 | + |
| chr2H | 15 | 752594122 | 752594017 | + |
| chr2H | 16 | 752594806 | 752594437 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g29220.1 | +2 | 8e-169 | 492 | 229/312 (73%) | protein|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed |
| TAIR PP10 | AT3G23510 @ ARAPORT AT3G23510.1 @ TAIR |
+2 | 3e-137 | 423 | 197/309 (64%) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867 |
| BRACH PP3 | Bradi5g02490.1.p | +2 | 5e-160 | 483 | 227/324 (70%) | pacid=32809829 transcript=Bradi5g02490.1 locus=Bradi5g02490 ID=Bradi5g02490.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2018 bp)
>HORVU2Hr1G122160.4 2018 150831_barley_pseudomolecules CTATTACTTACTGGCTAAACCAAATTCAGAAATTTGAATCGGGCAGGCCTTTCCTGGTGA CACTCAATCCCCCTTGTGTTCCGGATCATGTACTACTTAAATGGAATACAAGCCTTCCTG TTCCGTCTGTGGCCGCGGCGAAGGCTTATCTTCAGCTTGATCAGATCCAGGGAAAGAGGG GAATATGGTTCTGTGGGGCATATCAAGGTCATGGCTTCCATGAAGACGGATTAAAGTCTG GGAAAGCAGCGGCTCAAGGTTTGCTTGGAAAGAAATGTGAGCTTCTGCTGAACCCAAAGA ATATGATTCCATCATGGATTGAGGCTGGGGCACGCCTTCTAGTTGCAAGATTTTTCAACC AATACATATCCATTGGTAACTTGATATTGGTCGAAGAAGGAGGTAGTGTGTTCAGCTTTG GTAAAGCTTGCGACAAATGCCGTGTAAAATCTGTCATCCAAGTTCATGACCCCTTGTTCT ATTGGAAGGTTGCAATAGAAGGAGGCATGGGCTTGGCAGAATCCTATATTGACGGTTGTT TCTCTGTTCTTGACAAGAGAGAAGGCCTTCTAAATCTTATCCTGATTCTCATTGCTAACA GAGACGAGCGTAGGAACCGCCGCATTGCCAGAAAAGGGTTCTGAAACCTTCAATTGTCCA CTAGATTCCTATGAATTGTTTGATAAAAATGAAGTAGTACCTATGAGTATGCGTTTGTGA TTAATCCTGTACATGCTGTTTTTCGGTTTGCAGGTTTTGGTTGTCACCCTTCCATGTAAT AGCTCAATTGGCATATGCTAAACACTTTTTGCGCCAGGCAACAAGGAAGAACACTGCAAC ACAAACTCGTCGAAACATCTCTGAGCACTATGATCTTAGTAACGACTTTTTTTCGCTTTT TCTGGATAAATCGATGACTTACTCCTGTGCAGTTTTCAAGGAGAACGAAAGCTTAGAAGC AGCCCAACAACGTAAACTTAGCCTTCTAATCAACAAGGCTAAAGTCAAGAGGGAGCATCA TGTTCTTGATATCGGTAGCGGCTGGGGAAGTTTAGCAATAGAAACAGTTAAGCAAACTGG CTGCAAATACACTGGAGTCACTTTATCGGCGGAGCAGCATAAATACGCAGAAAGAAAAGT AAGAGAAGCTGGCTTAGAGGACCGCATAAATTTTCTGCTGTGCGACTACCGTAAAATACC ACCTTTTAAGTATGACGCAATCATAAGCTGTGGTATGATTGAACATGTTGGCCATGAATA CATGGACGAATTTTTTGCTTGCTGTGAGTCTTACTTGGCTGAAGATGGGATATTGGTCCT CCAGTTCATCTCAGTTCCAGAGGAACGGTACGAGCAATACAGAAAAAGGCCAGACTTCAT AAAAGAGTACATATTCCCTGGTGGTTGCCTTCCTTCTTTGGCCCGTATAATGTCTGCCAT GACCGCGTCATCAAGGTTCTGCATAGAGCATGTCGAGAATATTGGGCCCAATTACTACAC AACTCTGATGCACTGGAGGGACAACTTCATGGCCAACAGAGACCAAGTTTTGGCCCTGGG CTTTGATGAAAGGTTCCTCCGTATATGGGAGTACTACCTCATATTCTCTGCGGCTGGTTT CAAGTCACGAGCAATTGGAGATTACCAGGTTGTTTTCTCTCGTCCAGGCAATCGTCGTCT AGGCCAGCCTTGATGGCCGGAGACAACATATCCTTCTCCGTTCAGCGGCCGAATGGTTAC TTGTCAGTACCGTACGAGATTTTAATAAGTCAGTCCTGGAATGATTCGCTCATGCCGGAA TCCTACTCAGGTGGTTTGGTGATCTATCTTGTTGTTTAACCATGCAATGGTTAGTTTTTC GTGGGAGTGTCTTGTTATCCATCAATTAACTAGAATTTTGAGAATTGTATGTAAGGAACT GGTTTGTTTGCTTTAATATCTATGAGGAAGAGTTGATGTCCTTGCTTGTAGTTTCTCATG ATCTGATCTATTCGGTGTTTGCCGTTTTCAATGCTTGC