Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u16377	93.5	+	+	7841	-545	Containing

Transcripts from Gene HORVU2Hr1G122160

Transcript	Length(bp)	Description
HORVU2Hr1G122160.1	2539	gene=HORVU2Hr1G122160 CDS=168-2528
HORVU2Hr1G122160.2	2582	gene=HORVU2Hr1G122160 CDS=1-2571
HORVU2Hr1G122160.3	2407	gene=HORVU2Hr1G122160 CDS=3-2135
HORVU2Hr1G122160.4	2018	gene=HORVU2Hr1G122160 CDS=914-1693

Exon Structure of HORVU2Hr1G122160

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os12g16650.1	+1	0.0	1017	524/792 (66%)	protein|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed
TAIR PP10	AT3G23510 @ ARAPORT AT3G23510.1 @ TAIR	+1	0.0	898	452/793 (57%)	Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867
BRACH PP3	Bradi5g02490.1.p	+1	0.0	1092	552/795 (69%)	pacid=32809829 transcript=Bradi5g02490.1 locus=Bradi5g02490 ID=Bradi5g02490.1.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons