Transcript Data
Barley RTD
Links



Exon Structure of HORVU2Hr1G122160.3

ChromosomeExonStartStopDirection
chr2H1752588451752588381+
chr2H2752588933752588832+
chr2H3752589073752589014+
chr2H4752589262752589184+
chr2H5752589517752589367+
chr2H6752589725752589602+
chr2H7752590240752590063+
chr2H8752590438752590410+
chr2H9752590913752590765+
chr2H10752591094752590992+
chr2H11752591357752591262+
chr2H12752591496752591444+
chr2H13752591736752591613+
chr2H14752592021752591959+
chr2H15752592164752592108+
chr2H16752592439752592278+
chr2H17752593033752592963+
chr2H18752593214752593121+
chr2H19752593626752593490+
chr2H20752593809752593729+
chr2H21752594122752594017+
chr2H22752594753752594437+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os12g16650.2 +3 0.0 949 481/710 (68%) protein|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed
TAIR PP10 AT3G23510 @ ARAPORT
AT3G23510.1 @ TAIR		 +3 0.0 831 421/707 (60%) Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867
BRACH PP3 Bradi5g02490.1.p +3 0.0 1003 503/724 (69%) pacid=32809829 transcript=Bradi5g02490.1 locus=Bradi5g02490 ID=Bradi5g02490.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2407 bp)

>HORVU2Hr1G122160.3 2407 150831_barley_pseudomolecules
ATCGTAATGAGACACTGGGGCAGTTCATTCAGTCGCATGGATATTCCCTATCGTTTCAAG
AGGCTTATCTTATTCCAGTCTGCACAGGCACGTGGTCATGTTCATCACAAGATGTTTTGA
GCCTGTCTGCTTTCTTGGTGCTGTCATTTTGCCGTAACCATGGCCTTCTTCAGCTGTTTC
GTCACTCCCAGTTGCCCACTGTCAAGCCTAGTTCGCAGTCCTATGTAAACAAGGTAAAAG
GAGAATTGGAGAGCATTGGCTGTCGAATTAAAACCAGTTGTCGGGTCAAATCTGTTTCAA
GTCTTGATGGAGCTGGCTACAGAGTCTTGGAGAATGATGGTTCAGTGGAAACATACGACA
GTGTCATCTTTGGGGTCCATGCATCCAATGCTCTCAAATTATTAGGAGCTGAAGCATCAC
ATCACGAACGAAGAATTCTAGGTGCCTGTCAGTATGTCCAAAGAGATATATACCTCCACT
GCGATCAAAATTTGATGCCCCGAAAATCAGCAGCATGGAGTGCGTGGAATTTCCTTGGGA
CAACTAGTAGGGGTTTTTCTATTACTTACTGGCTAAACCAAATTCAGAAATTTGAATCGG
GCAGGCCTTTCCTGGTGACACTCAATCCCCCTTGTGTTCCGGATCATGTACTACTTAAAT
GGAATACAAGCCTTCCTGTTCCGTCTGTGGCCGCGGCGAAGGCTTATCTTCAGCTTGATC
AGATCCAGGGAAAGAGGGGAATATGGTTCTGTGGGGCATATCAAGGTCATGGCTTCCATG
AAGACGGATTAAAGTCTGGGAAAGCAGCGGCTCAAGGTTTGCTTGGAAAGAAATGTGAGC
TTCTGCTGAACCCAAAGAATATGATTCCATCATGGATTGAGGCTGGGGCACGCCTTCTAG
TTGCAAGATTTTTCAACCAATACATATCCATTGGTAACTTGATATTGGTCGAAGAAGGAG
GTAGTGTGTTCAGCTTTGGTAAAGCTTGCGACAAATGCCGTGTAAAATCTGTCATCCAAG
TTCATGACCCCTTGTTCTATTGGAAGGTTGCAATAGAAGGAGGCATGGGCTTGGCAGAAT
CCTATATTGACGGTTGTTTCTCTGTTCTTGACAAGAGAGAAGGCCTTCTAAATCTTATCC
TGATTCTCATTGCTAACAGAGACGAGCGTAGGAACCGCCGCATTGCCAGAAAAGGGTTTT
GGTTGTCACCCTTCCATGTAATAGCTCAATTGGCATATGCTAAACACTTTTTGCGCCAGG
CAACAAGGAAGAACACTGCAACACAAACTCGTCGAAACATCTCTGAGCACTATGATCTTA
GTAACGACTTTTTTTCGCTTTTTCTGGATAAATCGATGACTTACTCCTGTGCAGTTTTCA
AGGAGAACGAAAGCTTAGAAGCAGCCCAACAACGTAAACTTAGCCTTCTAATCAACAAGG
CTAAAGTCAAGAGGGAGCATCATGTTCTTGATATCGGTAGCGGCTGGGGAAGTTTAGCAA
TAGAAACAGTTAAGCAAACTGGCTGCAAATACACTGGAGTCACTTTATCGGCGGAGCAGC
ATAAATACGCAGAAAGAAAAGTAAGAGAAGCTGGCTTAGAGGACCGCATAAATTTTCTGC
TGTGCGACTACCGTAAAATACCACCTTTTAAGTATGACGCAATCATAAGCTGTGGTATGA
TTGAACATGTTGGCCATGAATACATGGACGAATTTTTTGCTTGCTGTGAGTCTTACTTGG
CTGAAGATGGGATATTGGTCCTCCAGTTCATCTCAGTTCCAGAGGAACGGTACGAGCAAT
ACAGAAAAAGGCCAGACTTCATAAAAGAGTACATATTCCCTGGTGGTTGCCTTCCTTCTT
TGGCCCGTATAATGTCTGCCATGACCGCGTCATCAAGGTTCTGCATAGAGCATGTCGAGA
ATATTGGGCCCAATTACTACACAACTCTGATGCACTGGAGGGACAACTTCATGGCCAACA
GAGACCAAGTTTTGGCCCTGGGCTTTGATGAAAGGTTCCTCCGTATATGGGAGTACTACC
TCATATTCTCTGCGGCTGGTTTCAAGTCACGAGCAATTGGAGATTACCAGGTTGTTTTCT
CTCGTCCAGGCAATCGTCGTCTAGGCCAGCCTTGATGGCCGGAGACAACATATCCTTCTC
CGTTCAGCGGCCGAATGGTTACTTGTCAGTACCGTACGAGATTTTAATAAGTCAGTCCTG
GAATGATTCGCTCATGCCGGAATCCTACTCAGGTGGTTTGGTGATCTATCTTGTTGTTTA
ACCATGCAATGGTTAGTTTTTCGTGGGAGTGTCTTGTTATCCATCAATTAACTAGAATTT
TGAGAATTGTATGTAAGGAACTGGTTTGTTTGCTTTAATATCTATGAGGAAGAGTTGATG
TCCTTGC