Transcript Data
Barley RTD
Links



Exon Structure of HORVU2Hr1G122160.2

ChromosomeExonStartStopDirection
chr2H1752587083752586991+
chr2H2752587585752587540+
chr2H3752587698752587643+
chr2H4752588225752587999+
chr2H5752588451752588346+
chr2H6752588933752588832+
chr2H7752589073752589014+
chr2H8752589262752589184+
chr2H9752589517752589364+
chr2H10752589725752589602+
chr2H11752590240752590063+
chr2H12752590438752590410+
chr2H13752590913752590765+
chr2H14752591094752590992+
chr2H15752591357752591262+
chr2H16752591496752591444+
chr2H17752591736752591613+
chr2H18752592021752591959+
chr2H19752592164752592108+
chr2H20752592439752592278+
chr2H21752593033752592963+
chr2H22752593214752593121+
chr2H23752593626752593490+
chr2H24752593809752593729+
chr2H25752594122752594017+
chr2H26752594406752594375+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os12g16650.1 +1 0.0 1017 524/792 (66%) protein|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed
TAIR PP10 AT3G23510 @ ARAPORT
AT3G23510.1 @ TAIR		 +1 0.0 898 452/793 (57%) Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867
BRACH PP3 Bradi5g02490.1.p +1 0.0 1092 552/795 (69%) pacid=32809829 transcript=Bradi5g02490.1 locus=Bradi5g02490 ID=Bradi5g02490.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2582 bp)

>HORVU2Hr1G122160.2 2582 150831_barley_pseudomolecules
GCTCGAAGAACATCAGGGAGCCTCGCCGTGAGCTCGTCGTCCCTATTGGGTAGGCACGCA
AGGTCAGGCAATCCAGGATTGATCGGCACCATATGGCTTCCTACTCCTAGTGAAAAGATT
GAGACTCAGCCGATTCCTGCTCAGGAAAACGCTTTTCTTGCAGCATCTGGCTTGATATCA
TCAATCAGAGTTCTTGTAACATATCCGCAAATGATGGAATGGTTAGAAGGGCTCGGGGTT
GAGATGGAGAGGTCAGACATGTCTTTCTCTGTGAGCACACAATCTAAAGGAGGCGGTGGA
GGATGTGAGTGGGGAAATGGTAACGGTATATCGAGCCTCTTGGCGCAAAAAACCAACATA
CTGAAACCCAGTTTTTGGCACATGGTCTGTGAGATACTCAAGTTCAAGAACAATGCCCTG
ACGTACCTGGAGGACCATGAACGTAACCCTGATCTGGATCGTAATGAGACACTGGGGCAG
TTCATTCAGTCGCATGGATATTCCCTATCGTTTCAAGAGGCTTATCTTATTCCAGTCTGC
ACAGGCACGTGGTCATGTTCATCACAAGATGTTTTGAGCCTGTCTGCTTTCTTGGTGCTG
TCATTTTGCCGTAACCATGGCCTTCTTCAGCTGTTTCGTCACTCCCAGTTGCCCACTGTC
AAGCCTAGTTCGCAGTCCTATGTAAACAAGGTAAAAGGAGAATTGGAGAGCATTGGCTGT
CGAATTAAAACCAGTTGTCGGGTCAAATCTGTTTCAAGTCTTGATGGAGCAGCTGGCTAC
AGAGTCTTGGAGAATGATGGTTCAGTGGAAACATACGACAGTGTCATCTTTGGGGTCCAT
GCATCCAATGCTCTCAAATTATTAGGAGCTGAAGCATCACATCACGAACGAAGAATTCTA
GGTGCCTGTCAGTATGTCCAAAGAGATATATACCTCCACTGCGATCAAAATTTGATGCCC
CGAAAATCAGCAGCATGGAGTGCGTGGAATTTCCTTGGGACAACTAGTAGGGGTTTTTCT
ATTACTTACTGGCTAAACCAAATTCAGAAATTTGAATCGGGCAGGCCTTTCCTGGTGACA
CTCAATCCCCCTTGTGTTCCGGATCATGTACTACTTAAATGGAATACAAGCCTTCCTGTT
CCGTCTGTGGCCGCGGCGAAGGCTTATCTTCAGCTTGATCAGATCCAGGGAAAGAGGGGA
ATATGGTTCTGTGGGGCATATCAAGGTCATGGCTTCCATGAAGACGGATTAAAGTCTGGG
AAAGCAGCGGCTCAAGGTTTGCTTGGAAAGAAATGTGAGCTTCTGCTGAACCCAAAGAAT
ATGATTCCATCATGGATTGAGGCTGGGGCACGCCTTCTAGTTGCAAGATTTTTCAACCAA
TACATATCCATTGGTAACTTGATATTGGTCGAAGAAGGAGGTAGTGTGTTCAGCTTTGGT
AAAGCTTGCGACAAATGCCGTGTAAAATCTGTCATCCAAGTTCATGACCCCTTGTTCTAT
TGGAAGGTTGCAATAGAAGGAGGCATGGGCTTGGCAGAATCCTATATTGACGGTTGTTTC
TCTGTTCTTGACAAGAGAGAAGGCCTTCTAAATCTTATCCTGATTCTCATTGCTAACAGA
GACGAGCGTAGGAACCGCCGCATTGCCAGAAAAGGGTTTTGGTTGTCACCCTTCCATGTA
ATAGCTCAATTGGCATATGCTAAACACTTTTTGCGCCAGGCAACAAGGAAGAACACTGCA
ACACAAACTCGTCGAAACATCTCTGAGCACTATGATCTTAGTAACGACTTTTTTTCGCTT
TTTCTGGATAAATCGATGACTTACTCCTGTGCAGTTTTCAAGGAGAACGAAAGCTTAGAA
GCAGCCCAACAACGTAAACTTAGCCTTCTAATCAACAAGGCTAAAGTCAAGAGGGAGCAT
CATGTTCTTGATATCGGTAGCGGCTGGGGAAGTTTAGCAATAGAAACAGTTAAGCAAACT
GGCTGCAAATACACTGGAGTCACTTTATCGGCGGAGCAGCATAAATACGCAGAAAGAAAA
GTAAGAGAAGCTGGCTTAGAGGACCGCATAAATTTTCTGCTGTGCGACTACCGTAAAATA
CCACCTTTTAAGTATGACGCAATCATAAGCTGTGGTATGATTGAACATGTTGGCCATGAA
TACATGGACGAATTTTTTGCTTGCTGTGAGTCTTACTTGGCTGAAGATGGGATATTGGTC
CTCCAGTTCATCTCAGTTCCAGAGGAACGGTACGAGCAATACAGAAAAAGGCCAGACTTC
ATAAAAGAGTACATATTCCCTGGTGGTTGCCTTCCTTCTTTGGCCCGTATAATGTCTGCC
ATGACCGCGTCATCAAGGTTCTGCATAGAGCATGTCGAGAATATTGGGCCCAATTACTAC
ACAACTCTGATGCACTGGAGGGACAACTTCATGGCCAACAGAGACCAAGTTTTGGCCCTG
GGCTTTGATGAAAGGTTCCTCCGTATATGGGAGTACTACCTCATATTCTCTGCGGCTGGT
TTCAAGTCACGAGCAATTGGAGATTACCAGGAGGTATGCTCCAGGTACTAATTGTGGTGC
CT