Transcript Data
Barley RTD
Links



Exon Structure of HORVU2Hr1G122160.1

ChromosomeExonStartStopDirection
chr2H1752587083752586966+
chr2H2752587936752587903+
chr2H3752588225752587999+
chr2H4752588451752588346+
chr2H5752588933752588832+
chr2H6752589073752589014+
chr2H7752589262752589184+
chr2H8752589517752589364+
chr2H9752589725752589602+
chr2H10752590240752590063+
chr2H11752590438752590410+
chr2H12752590913752590765+
chr2H13752591094752590992+
chr2H14752591357752591262+
chr2H15752591496752591444+
chr2H16752591736752591613+
chr2H17752592021752591959+
chr2H18752592164752592108+
chr2H19752592439752592278+
chr2H20752593033752592963+
chr2H21752593214752593121+
chr2H22752593626752593490+
chr2H23752593809752593729+
chr2H24752594122752594017+
chr2H25752594406752594375+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os12g16650.1 +3 0.0 1016 524/792 (66%) protein|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed
TAIR PP10 AT3G23510 @ ARAPORT
AT3G23510.1 @ TAIR		 +3 0.0 898 452/795 (57%) Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867
BRACH PP3 Bradi5g02490.1.p +3 0.0 1092 552/797 (69%) pacid=32809829 transcript=Bradi5g02490.1 locus=Bradi5g02490 ID=Bradi5g02490.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2539 bp)

>HORVU2Hr1G122160.1 2539 150831_barley_pseudomolecules
CGTCGTTTGATGCAGGCCCCGTCGGGCTCGAAGAACATCAGGGAGCCTCGCCGTGAGCTC
GTCGTCCCTATTGGGTAGGCACGCAAGGTCAGGCAATCCAGGATTGATCGGCACCATATA
TATGGCTTCCTAATCCCTTGACTAATCATGAAGTAACATATCCGCAAATGATGGAATGGT
TAGAAGGGCTCGGGGTTGAGATGGAGAGGTCAGACATGTCTTTCTCTGTGAGCACACAAT
CTAAAGGAGGCGGTGGAGGATGTGAGTGGGGAAATGGTAACGGTATATCGAGCCTCTTGG
CGCAAAAAACCAACATACTGAAACCCAGTTTTTGGCACATGGTCTGTGAGATACTCAAGT
TCAAGAACAATGCCCTGACGTACCTGGAGGACCATGAACGTAACCCTGATCTGGATCGTA
ATGAGACACTGGGGCAGTTCATTCAGTCGCATGGATATTCCCTATCGTTTCAAGAGGCTT
ATCTTATTCCAGTCTGCACAGGCACGTGGTCATGTTCATCACAAGATGTTTTGAGCCTGT
CTGCTTTCTTGGTGCTGTCATTTTGCCGTAACCATGGCCTTCTTCAGCTGTTTCGTCACT
CCCAGTTGCCCACTGTCAAGCCTAGTTCGCAGTCCTATGTAAACAAGGTAAAAGGAGAAT
TGGAGAGCATTGGCTGTCGAATTAAAACCAGTTGTCGGGTCAAATCTGTTTCAAGTCTTG
ATGGAGCAGCTGGCTACAGAGTCTTGGAGAATGATGGTTCAGTGGAAACATACGACAGTG
TCATCTTTGGGGTCCATGCATCCAATGCTCTCAAATTATTAGGAGCTGAAGCATCACATC
ACGAACGAAGAATTCTAGGTGCCTGTCAGTATGTCCAAAGAGATATATACCTCCACTGCG
ATCAAAATTTGATGCCCCGAAAATCAGCAGCATGGAGTGCGTGGAATTTCCTTGGGACAA
CTAGTAGGGGTTTTTCTATTACTTACTGGCTAAACCAAATTCAGAAATTTGAATCGGGCA
GGCCTTTCCTGGTGACACTCAATCCCCCTTGTGTTCCGGATCATGTACTACTTAAATGGA
ATACAAGCCTTCCTGTTCCGTCTGTGGCCGCGGCGAAGGCTTATCTTCAGCTTGATCAGA
TCCAGGGAAAGAGGGGAATATGGTTCTGTGGGGCATATCAAGGTCATGGCTTCCATGAAG
ACGGATTAAAGTCTGGGAAAGCAGCGGCTCAAGGTTTGCTTGGAAAGAAATGTGAGCTTC
TGCTGAACCCAAAGAATATGATTCCATCATGGATTGAGGCTGGGGCACGCCTTCTAGTTG
CAAGATTTTTCAACCAATACATATCCATTGGTAACTTGATATTGGTCGAAGAAGGAGGTA
GTGTGTTCAGCTTTGGTAAAGCTTGCGACAAATGCCGTGTAAAATCTGTCATCCAAGTTC
ATGACCCCTTGTTCTATTGGAAGGTTGCAATAGAAGGAGGCATGGGCTTGGCAGAATCCT
ATATTGACGGTTGTTTCTCTGTTCTTGACAAGAGAGAAGGCCTTCTAAATCTTATCCTGA
TTCTCATTGCTAACAGAGACGAGCGTAGGAACCGCCGCATTGCCAGAAAAGGGTTTTGGT
TGTCACCCTTCCATGTAATAGCTCAATTGGCATATGCTAAACACTTTTTGCGCCAGGCAA
CAAGGAAGAACACTGCAACACAAACTCGTCGAAACATCTCTGAGCACTATGATCTTAGTA
ACGACTTTTTTTCGCTTTTTCTGGATAAATCGATGACTTACTCCTGTGCAGTTTTCAAGG
AGAACGAAAGCTTAGAAGCAGCCCAACAACGTAAACTTAGCCTTCTAATCAACAAGGCTA
AAGTCAAGAGGGAGCATCATGTTCTTGATATCGGTAGCGGCTGGGGAAGTTTAGCAATAG
AAACAGTTAAGCAAACTGGCTGCAAATACACTGGAGTCACTTTATCGGCGGAGCAGCATA
AATACGCAGAAAGAAAAGTAAGAGAAGCTGGCTTAGAGGACCGCATAAATTTTCTGCTGT
GCGACTACCGTAAAATACCACCTTTTAAGTATGACGCAATCATAAGCTGTGGTATGATTG
AACATGTTGGCCATGAATACATGGACGAATTTTTTGCTTGCTGTGAGTCTTACTTGGCTG
AAGATGGGATATTGGTCCTCCAGTTCATCTCAGTTCCAGAGGAACGGTACGAGCAATACA
GAAAAAGGCCAGACTTCATAAAAGAGTACATATTCCCTGGTGGTTGCCTTCCTTCTTTGG
CCCGTATAATGTCTGCCATGACCGCGTCATCAAGGTTCTGCATAGAGCATGTCGAGAATA
TTGGGCCCAATTACTACACAACTCTGATGCACTGGAGGGACAACTTCATGGCCAACAGAG
ACCAAGTTTTGGCCCTGGGCTTTGATGAAAGGTTCCTCCGTATATGGGAGTACTACCTCA
TATTCTCTGCGGCTGGTTTCAAGTCACGAGCAATTGGAGATTACCAGGAGGTATGCTCCA
GGTACTAATTGTGGTGCCT