- Transcript HORVU2Hr1G102860.1
- Transcript IDHORVU2Hr1G102860.1
- Gene IDHORVU2Hr1G102860
Barley RTD
Exon Structure of HORVU2Hr1G102860.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 698441756 | 698441459 | + |
| chr2H | 2 | 698442073 | 698441943 | + |
| chr2H | 3 | 698442289 | 698442184 | + |
| chr2H | 4 | 698442484 | 698442385 | + |
| chr2H | 5 | 698443523 | 698443478 | + |
| chr2H | 6 | 698444405 | 698443957 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g50864.1 | +3 | 2e-96 | 285 | 138/159 (87%) | protein|expressed protein |
| TAIR PP10 | AT1G68310 @ ARAPORT AT1G68310.2 @ TAIR |
+3 | 6e-74 | 226 | 111/153 (73%) | Symbols: AE7 | Protein of unknown function (DUF59) | chr1:25599812-25601239 FORWARD LENGTH=157 |
| BRACH PP3 | Bradi1g72250.4.p | +3 | 3e-99 | 291 | 141/159 (89%) | pacid=32792585 transcript=Bradi1g72250.4 locus=Bradi1g72250 ID=Bradi1g72250.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1130 bp)
>HORVU2Hr1G102860.1 1130 150831_barley_pseudomolecules AACGATTCATCACGGTGAAAGGAGCCACGAGGAGAGCCTCCCACCTCCGATCCCGATCTG AAAAAAAACCCTCGGCCACACAGGGGCCGCTAGGGTTCCCGCCGCCTCCACCGCCCCCCC GCCGGCACTCCGCCGCCGCAGCCGCACGTCCAGCCGGCCTAAACCTCCTCTGCCCCGCCT CACGCGCCTCCCTGGAGCAGCCGCGCCCGCCCAACAGGGCCGAGGCCTAGCAGCGGCGTC GTGGATTGGAGTTGCCGCTCCCACCAAGCAGCGCCTCCCCCCGGAGCTCCGCCGGCAGAG GGAAAATAGTAATGGAGTTGATAAATGCTAACCCTGTGATTCATGAGAAAAGAGAGAGGC GCACCCGTCAGGCACCAGAAGACATAGATGAAAATGCAACAGAGGCCATAGACCAGCTTG AGATATTTGATCATATTAGAGACATAAAGGACCCAGAACATCCATACTCATTGGAAGATC TTAATGTGGTAAATGAAGACTCGGTCGAAATCAATGATGAACTTAGTCATGTCAGGGTTA CTTTCACCCCAACAGTGGAGCATTGCAGTATGGCCACTATCATTGGCCTTTGCTTACGTG TGAAGCTGATGCGGAGTCTTCCACCTCGTTACAAGGTGGACATACGGTTGACTCCTGGAT CACATGCAACTGAAGCTGCCGTGAACAAGCAACTGAGCGACAAAGAACGTGTGGCGGCCG CGCTGGAGAATTCAAACCTGCTGGACATAGTGGAGGAATGCTTGTCACCGACGCTCGGTT GAGACCTGAGTAGGACTGGAAACCAGTGTGTGGATATATTCCTAGACCACAACAGATATT TGAGAAGAATTATAGGCGGTGCAGGACGTGTGCATGAATTTTGAGGCCCCATGCCTCTCT GTAAGCACATTGCTGCTGCTTCAGCTCTCGTATCGTAGTGGTAGTATGTAGGTCGTCGAG TGCTGCTATTTTTTTCTTGGAAGAACTGGGTGCTGCTACGTTTTTGTACGGTCCTGATTG TACATTGAGGGATAATAGTGCGGTGATCCGTGCCGTCTCTAAAATTCTGTCTGGGTTACT GTTATCCTGGGTCATGAATTGAATATATCATGCTTATCCTTTTATTTGAA