Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u14701	87.5	+	+	2947	-423	Containing

Transcripts from Gene HORVU2Hr1G102860

Transcript	Length(bp)	Description
HORVU2Hr1G102860.1	1130	gene=HORVU2Hr1G102860 CDS=312-782
HORVU2Hr1G102860.2	1140	gene=HORVU2Hr1G102860 CDS=322-792

Exon Structure of HORVU2Hr1G102860

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os04g50864.1	+1	1e-95	283	138/159 (87%)	protein|expressed protein
TAIR PP10	AT1G68310 @ ARAPORT AT1G68310.2 @ TAIR	+1	3e-73	225	111/153 (73%)	Symbols: AE7 | Protein of unknown function (DUF59) | chr1:25599812-25601239 FORWARD LENGTH=157
BRACH PP3	Bradi1g72250.4.p	+1	2e-98	290	141/159 (89%)	pacid=32792585 transcript=Bradi1g72250.4 locus=Bradi1g72250 ID=Bradi1g72250.4.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons