- Transcript HORVU2Hr1G096850.4
- Transcript IDHORVU2Hr1G096850.4
- Gene IDHORVU2Hr1G096850
Barley RTD
Exon Structure of HORVU2Hr1G096850.4
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 677023835 | 677023530 | + |
| chr2H | 2 | 677024057 | 677023980 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g47020.1 | +1 | 3e-62 | 194 | 107/178 (60%) | protein|genetic modifier, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi5g18060.5.p | +1 | 4e-62 | 193 | 104/176 (59%) | pacid=32810155 transcript=Bradi5g18060.5 locus=Bradi5g18060 ID=Bradi5g18060.5.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (384 bp)
>HORVU2Hr1G096850.4 384 150831_barley_pseudomolecules CAAGAAATCGAAAGGTTAGCAGCACGTAAGGAGGTCATATATCAGAAACTCCGAGGTACT TTCTATCAGCTGCGGCCAGGTGTTCTCGACTTCTTGAACACCCTTGTGGATTCTGATATT CCAATAGCAGTAACAGCTTCTCGCCCCAGAATGAGCCTGGAAGAAAGCATAAAAGCCGTT GGTCTGCAAGGCTATTTCGATGTCATAGTGGCGGCGGAGGACTTCCACCGAGGGAAACCC GAGGGTGAGATTTTTGAGGTTGCAGCAGACCAGCTTGGTCTTGAGCCTGATGTCTGTCTT GTGATGAGGCTCGCCAATGGCGAGGTTCTTGGGCGCAGGGGCAGACAATCTGACATGGAC ATGGAGATTGTGATCGAGGAGTGA