- Transcript HORVU2Hr1G096850.1
- Transcript IDHORVU2Hr1G096850.1
- Gene IDHORVU2Hr1G096850
Barley RTD
Exon Structure of HORVU2Hr1G096850.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 677022138 | 677021975 | + |
| chr2H | 2 | 677024267 | 677022911 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g47020.1 | +1 | 3e-170 | 485 | 271/352 (77%) | protein|genetic modifier, putative, expressed |
| TAIR PP10 | AT4G11570 @ ARAPORT AT4G11570.2 @ TAIR |
+1 | 8e-63 | 209 | 96/197 (49%) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:7004743-7005864 FORWARD LENGTH=373 |
| BRACH PP3 | Bradi5g18060.7.p | +1 | 0.0 | 516 | 278/340 (82%) | pacid=32810154 transcript=Bradi5g18060.7 locus=Bradi5g18060 ID=Bradi5g18060.7.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1521 bp)
>HORVU2Hr1G096850.1 1521 150831_barley_pseudomolecules CCGCATTATTGCCTATCCGGATGGGAGGCCATCCCCACCATCCAAGGGAAGAAGCGCCGG GCACCGAGCGAGCCGTGCGGGGGCGCCTCCTCTACTCCCTCCCCACTCCCGCCGATGCTC TTCAGCTCCACCTCCGACCTCCGCATCATCTTCTTCTTCCACGGCACAGGTGAAGTGTTC AGCTATGCTTCTCGTTGACCAGTCACACTTGAACTGAATCGACTTTGCTGCGAAGTGCTT GACAGTTTCAGTGAAAGTGTAGAGGACTTAGCAATGATCTCATCCATCAGCTTACTTGAC AGTTCCCACCAGCTCATTCAGAAACTGTACAGAAAATGCTGGCCAAGTAACTCAAATTCC AAACTGAACATGCATGCAACCGCGAAATCTGGGGGTAAGAGCATGAGGGTGAAGATGGCA CTTCTGAAGCCCCATGCAACTGACTTCAAGAGGAATCATCAAGCCCACGAGGAAGACAAT GTGTTTTACAAATTAGTTTATAGGCTCCCTGAAAGCCTTAGCTGTCTGTACACCAGTCAA AAACCAGTCAGAAAGAAGAAACAACAGAAGCAAGGAACTGTGTCCAGTAACCGGTTTGGT GTGATCTTGGAGTGGGAGGGAGTTGTTGTGGAAGATGATGACCCGGACCTGGAGCCCCGA GTGTGGTATGTATTATCACTTGAAGAGGCGAAGTCTTTCCCTCCGGATGAAACGCTGAAG AAAATCGAGGGAATGAGAACTGATCAGGCCATCTCAGAAGTCTTAAGTTGGTCGAAAGAT CGACAAGAAATCGAAAGGTTAGCAGCACGTAAGGAGGTCATATATCAGAAACTCCGAGGT ACTTTCTATCAGCTGCGGCCAGGTGTTCTCGACTTCTTGAACACCCTTGTGGATTCTGAT ATTCCAATAGCAGTAACAGCTTCTCGCCCCAGAATGAGCCTGGAAGAAAGCATAAAAGCC GTTGGTCTGCAAGGCTATTTCGATGTCATAGTGGCGGCGGAGGACTTCCACCGAGGGAAA CCCGAGGGTGAGATTTTTGAGGTTGCAGCAGACCAGCTTGGTCTTGAGCCTGATGTCTGT CTTGTGATGGGTAGCTCAAACTTGACGACGCAGTCTGCACATACTGCTGGGATGAGGTGT GTGGCGGTTGCAAGCCGGCACCCTGCCTATGAACTTCATGCAGCAAACCATGTTGTGAGA TGGCTCGATCAACTCTCTGTTGTTGACCTGCAGAGGCTCGCCAATGGCGAGGTTCTTGGG CGCAGGGGCAGACAATCTGACATGGACATGGAGATTGTGATCGAGGAGTGATGTTTCTGC AGGCACTTATCTACTACTAATATATAACTGTGTTGTAACTTCAGTACTGCATTACATTTT GTGACAGACCAAGTAGTGTAACACGTAACAGATCAGCGTTCACTTCTTGTTTTCTTGTAA TGCATAACTGAAACTCAGTTAGCTTAGATGCTTTCAATCATCAGAAAGGAGTTGGAAGCG AAGAAACTTTCCACATTGCAA