- Transcript HORVU2Hr1G084930.44
- Transcript IDHORVU2Hr1G084930.44
- Gene IDHORVU2Hr1G084930
Barley RTD
Exon Structure of HORVU2Hr1G084930.44
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 614354548 | 614354472 | + |
| chr2H | 2 | 614354844 | 614354683 | + |
| chr2H | 3 | 614355033 | 614354977 | + |
| chr2H | 4 | 614355353 | 614355222 | + |
| chr2H | 5 | 614355517 | 614355431 | + |
| chr2H | 6 | 614355844 | 614355736 | + |
| chr2H | 7 | 614356065 | 614355929 | + |
| chr2H | 8 | 614356910 | 614356806 | + |
| chr2H | 9 | 614357771 | 614357683 | + |
| chr2H | 10 | 614357971 | 614357869 | + |
| chr2H | 11 | 614358168 | 614358064 | + |
| chr2H | 12 | 614358413 | 614358333 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g41530.1 | +3 | 0.0 | 610 | 289/349 (83%) | protein|serine/threonine-protein kinase GCN2, putative, expressed |
| TAIR PP10 | AT3G59410 @ ARAPORT AT3G59410.1 @ TAIR |
+3 | 1e-108 | 346 | 181/341 (53%) | Symbols: GCN2 | protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1241 |
| BRACH PP3 | Bradi5g14307.4.p | +3 | 0.0 | 653 | 312/344 (91%) | pacid=32809297 transcript=Bradi5g14307.4 locus=Bradi5g14307 ID=Bradi5g14307.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1244 bp)
>HORVU2Hr1G084930.44 1244 150831_barley_pseudomolecules AACTTGTCAAAGTACTCCTGCCATCTATGCTTAATGTCCTTGTTCTTCACCAGGAGCTGA TCTCCTCCATCCTTGATCTTGCTTAGCAGCCTTCTTGGCCATCTTGTACTTCTCTATGTT GCCTAACAGCGAATACTATTTTACACAATTACTTGCAGTTATCATCATGTAAGCGTTATG AAATATCATGGGTTCACAGAAGAGCAGTTGGCCATTCAACTCCTTATCGTTTTCTTCAGG GTGATTTTGACATCATTGGAGGTTCTTCACCAATAACACAGGCCGAAGTTATCAAGGTAG CTTTGGACCTTGTGAGACGTTTTTACAATTCGAAGGCAATAGTTATTCGACTGAATCATA GCAAACTCGCTGAAGCAGTTTGTTCCTGGGCAGGAGTTCCTCAGGAACGAAGACAGAATG TTGCTGAGTTTCTATCTTCTACTCTTGTTCAATATTGCCCAAACAAGGCGGATCGTAAGT CACAGTGGAGTTTCATTCGAGGGCAACTATTACAGGATCTTCGTCTTTCTGAAGAAGTTG TTGAAAAGCTACATAAAGCAGATCAGCGGTTTTGTGGATCTGCAGATCTAGTACTTGCTA GATTAAGAGGGACCTTTTTCTATGATAAATCTGCTTGCAAGGCTCTTGATGATCTCTCCA CATTCCTTAAATGTTTGAGGGTATGGTCAGTTGAAGAACATATTGCTATTGATGTACTTA TGCCTCCTTCAGACTATTACTACTCAGATATGTTTTTTCAGATCTACTCAAAAGAAGGCA GTCCTGCGTCGAGTTCCCATGAAAAGTTGCTTGCTGTTGGCGGGCGATATGATATGTTGA TGGAAAATGCTTGGGATAAGACACATAAAACCAAACCCCCGGGTGCTGTTGGTGTGAGCA TTGCACTTGAGAAATTCCTACCTAATAATCCTTCATCTGACGTTGGGTTGCCAAGGATTG AAAATAGCATCAGTGTACTAGTCTGTTCAAAGGGCGGCGGCGGACTCTTAAACGAACGCA TGGAACTTGTTGCAGAACTTTGGGAAGCTAACATAAAGGAAGACCCAAGTCTTCAAGAAC AATACGAGTACGCCAGTGATCATGACATCAAATGCCTTGTGTTTATCACTGAAGCAGGTC TTGCGCAAACTGATCTTGTGAAGAAAAGATCAAATCTGGTTTTACAGTTGTGCCTGTTTC TTGACCGTACCTTCTTGGACTTCTTGAGTGCCGTGTACGAATAA