Gene Data
Barley RTD
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Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u1319198.5++26247-401Containing




Transcripts from Gene HORVU2Hr1G084930

TranscriptLength(bp)Description
HORVU2Hr1G084930.14510gene=HORVU2Hr1G084930 CDS=386-3337
HORVU2Hr1G084930.24291gene=HORVU2Hr1G084930 CDS=377-4129
HORVU2Hr1G084930.32602gene=HORVU2Hr1G084930 CDS=963-2567
HORVU2Hr1G084930.44659gene=HORVU2Hr1G084930 CDS=374-3352
HORVU2Hr1G084930.54461gene=HORVU2Hr1G084930 CDS=374-3271
HORVU2Hr1G084930.64930gene=HORVU2Hr1G084930 CDS=2126-4297
HORVU2Hr1G084930.74829gene=HORVU2Hr1G084930 CDS=2126-4297
HORVU2Hr1G084930.84766gene=HORVU2Hr1G084930 CDS=2034-4205
HORVU2Hr1G084930.94867gene=HORVU2Hr1G084930 CDS=2034-4205
HORVU2Hr1G084930.104224gene=HORVU2Hr1G084930 CDS=362-2959
HORVU2Hr1G084930.114816gene=HORVU2Hr1G084930 CDS=657-3269
HORVU2Hr1G084930.124724gene=HORVU2Hr1G084930 CDS=569-3787
HORVU2Hr1G084930.134272gene=HORVU2Hr1G084930 CDS=357-4001
HORVU2Hr1G084930.144655gene=HORVU2Hr1G084930 CDS=352-4104
HORVU2Hr1G084930.154888gene=HORVU2Hr1G084930 CDS=648-2744
HORVU2Hr1G084930.164745gene=HORVU2Hr1G084930 CDS=349-3774
HORVU2Hr1G084930.174847gene=HORVU2Hr1G084930 CDS=557-3775
HORVU2Hr1G084930.184846gene=HORVU2Hr1G084930 CDS=349-3774
HORVU2Hr1G084930.194691gene=HORVU2Hr1G084930 CDS=348-3167
HORVU2Hr1G084930.204929gene=HORVU2Hr1G084930 CDS=347-3166
HORVU2Hr1G084930.214827gene=HORVU2Hr1G084930 CDS=347-4096
HORVU2Hr1G084930.224928gene=HORVU2Hr1G084930 CDS=347-4096
HORVU2Hr1G084930.231749gene=HORVU2Hr1G084930 CDS=801-1748
HORVU2Hr1G084930.241733gene=HORVU2Hr1G084930 CDS=801-1454
HORVU2Hr1G084930.254742gene=HORVU2Hr1G084930 CDS=1998-3239
HORVU2Hr1G084930.264759gene=HORVU2Hr1G084930 CDS=559-4101
HORVU2Hr1G084930.274860gene=HORVU2Hr1G084930 CDS=559-4101
HORVU2Hr1G084930.281467gene=HORVU2Hr1G084930 CDS=1-1467
HORVU2Hr1G084930.292632gene=HORVU2Hr1G084930 CDS=1-1518
HORVU2Hr1G084930.303663gene=HORVU2Hr1G084930 CDS=1-3663
HORVU2Hr1G084930.314052gene=HORVU2Hr1G084930 CDS=3-2657
HORVU2Hr1G084930.324772gene=HORVU2Hr1G084930 CDS=242-3460
HORVU2Hr1G084930.334671gene=HORVU2Hr1G084930 CDS=242-3460
HORVU2Hr1G084930.344231gene=HORVU2Hr1G084930 CDS=2-3670
HORVU2Hr1G084930.354332gene=HORVU2Hr1G084930 CDS=2-3670
HORVU2Hr1G084930.364137gene=HORVU2Hr1G084930 CDS=2-2695
HORVU2Hr1G084930.372724gene=HORVU2Hr1G084930 CDS=861-2720
HORVU2Hr1G084930.383093gene=HORVU2Hr1G084930 CDS=3-2414
HORVU2Hr1G084930.392906gene=HORVU2Hr1G084930 CDS=245-2320
HORVU2Hr1G084930.403003gene=HORVU2Hr1G084930 CDS=3-2417
HORVU2Hr1G084930.412485gene=HORVU2Hr1G084930 CDS=852-1967
HORVU2Hr1G084930.421671gene=HORVU2Hr1G084930 CDS=1-1671
HORVU2Hr1G084930.432402gene=HORVU2Hr1G084930 CDS=180-539
HORVU2Hr1G084930.441244gene=HORVU2Hr1G084930 CDS=720-1244



Exon Structure of HORVU2Hr1G084930


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os04g41510.1 +2 0.0 1326 679/907 (75%) protein|serine/threonine-protein kinase GCN2, putative, expressed
TAIR PP10 AT3G59410 @ ARAPORT
AT3G59410.1 @ TAIR		 +2 0.0 1140 624/1237 (50%) Symbols: GCN2 | protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1241
BRACH PP3 Bradi5g14307.1.p +2 0.0 2185 1115/1311 (85%) pacid=32809296 transcript=Bradi5g14307.1 locus=Bradi5g14307 ID=Bradi5g14307.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons