- Transcript HORVU2Hr1G084930.43
- Transcript IDHORVU2Hr1G084930.43
- Gene IDHORVU2Hr1G084930
Barley RTD
Exon Structure of HORVU2Hr1G084930.43
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 614351269 | 614350843 | + |
| chr2H | 2 | 614351485 | 614351389 | + |
| chr2H | 3 | 614354844 | 614354763 | + |
| chr2H | 4 | 614355033 | 614354977 | + |
| chr2H | 5 | 614355363 | 614355222 | + |
| chr2H | 6 | 614355517 | 614355441 | + |
| chr2H | 7 | 614355844 | 614355736 | + |
| chr2H | 8 | 614356065 | 614355929 | + |
| chr2H | 9 | 614356910 | 614356806 | + |
| chr2H | 10 | 614357971 | 614357683 | + |
| chr2H | 11 | 614358168 | 614358046 | + |
| chr2H | 12 | 614359478 | 614358722 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g41530.1 | +1 | 1e-163 | 467 | 218/265 (82%) | protein|serine/threonine-protein kinase GCN2, putative, expressed |
| TAIR PP10 | AT3G59410 @ ARAPORT AT3G59410.1 @ TAIR |
+1 | 3e-131 | 255 | 129/258 (50%) | Symbols: GCN2 | protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1241 |
| BRACH PP3 | Bradi5g14307.4.p | +1 | 0.0 | 510 | 241/268 (90%) | pacid=32809297 transcript=Bradi5g14307.4 locus=Bradi5g14307 ID=Bradi5g14307.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2402 bp)
>HORVU2Hr1G084930.43 2402 150831_barley_pseudomolecules CTCGTTTGTATGCTCTGTAATTTAATAAATTGGTAGATATTATTATCATCACGGACCTTT CAGGCAACTTGTTTCAGCCTTTTTCTTGTGTATGGATATTGAATATATTTGAAGTGTCAG TTCAATCTTTTTTTACTTATTATGTCTGCCTTTGTCCACTTTATGCAGATGTACTTAGAA TGATACAGACACCAGAAGACACTTACGTTTATGATCGAGTTATATCTACAATATTTAATG AAGATCGACTGGTCGCCAAAATGCAATGTCAGCATGAAAGCAGTAAAAAATCCACTTATA AAAATGATAACAGTGAACTCTTGGATTCCATTATTGAGGTTAGCAAAGAGGTTTTTAAGC GACATTGTGCTAAAAGGTTCCAGATAACACCCTTGCATACATTGGATGGGAAATTTACTG AAAATAGTGGAAAGACAGTGAAGATCCTAACGCAAGGAGGAGAGATGCTAGAACTTTGCT ATGAGCTGCGAACACCATTTGTTATGAACGTTGCTGCTAACCAGGTTATCATCATGTAAG CGTTATGAAATATCATGGGTTCACAGAAGAGCAGTTGGCCATTCAACTCCTTATCGTTTT CTTCAGGGTGATTTTGACATCATTGGAGGTTCTTCACCAATAACACAGGCCGAAGTTATC AAGGTAGCTTTGGACCTTGTGAGACGTTTTTACAATTCGAAGGCAATAGTTATTCGACTG AATCATAGCAAACTCGCTGAAGCAGTTTGTTCCTGGGCAGGAGTTCCTCAGGAACGAAGA CAGAATGTTGCTGAGGTACGCTATTCTACTCTTGTTCAATATTGCCCAAACAAGGCGGAT CGTAAGTCACAGTGGAGTTTCATTCGAGGGCAACTATTACAGGATCTTCGTCTTTCTGAA GAAGTTGTTGAAAAGCTACATAAAGCAGATCAGCGGTTTTGTGGATCTGCAGATCTAGTA CTTGCTAGATTAAGAGGGACCTTTTTCTATGATAAATCTGCTTGCAAGGCTCTTGATGAT CTCTCCACATTCCTTAAATGTTTGAGGGTATGGTCAGTTGAAGAACATATTGCTATTGAT GTACTTATGCCTCCTTCAGACTATTACTACTCAGATATGTTTTTTCAGATCTACTCAAAA GAAGGCAGTCCTGCGTCGAGTTCCCATGAAAAGTTGCTTGCTGTTGGCGGGCGATATGAT ATGTTGATGGAAAATGCTTGGGATAAGACACATAAAACCAAACCCCCGGGTGCTGTTGGT GTGAGCATTGCACTTGAGAAATTCCTACCTAATAATCCTTCATCTGACGTTGGGTTGCCA AGGTTGCACAACTGATCATCTAGCTGTACTGCATTTCACATCCCCCTTTAATGGGTCACT GAGATTTCTTTAGATGCGCTAATATTTTTTGGACATCAGGATTGAAAATAGCATCAGTGT ACTAGTCTGTTCAAAGGGCGGCGGCGGACTCTTAAACGAACGCATGGAACTTGTTGCAGA ACTTTGGGAAGCTAACATAAAGGCCCAGTTTGTTCCTCAGGAAGACCCAAGTCTTCAAGA ACAATACGAGTACGCCAGTGATCATGACATCAAATGCCTTGTGTTTATCACTGAAGCAGG TCTTGCGCAAACTGATCTTGTGAAGGTTAGACATCTCGATGCAAGAAAGGAGAAAGATGT TGAAAAGGAAGAAATTGTGAAGTTCCTGTCTGAAGCAATATCTTTACAGTTCAAAAATCC TACAATCTGGAGCTGATTGGCAGTCTGCTCCTAAGTGAATTTCAGGTTTGCTATTCCAAA TGGTCGATCAATATCAGACTTTTTATCTACCTATCCTGGATATGACGAAAAAGACCTGTC CTGGATATAATCTTTCCTATGGCCGGGTTAGTTTCCATTATGTTCTCGAGTTCCACCTTT TCTGCAGCTGAACCAGTTTGTGGTTACTGGTATTTTTCTCTTTGAACTTCCAGGTGAAAG CAGTGTTGCCTTGCCAAACATTTTCACCTACACCAAATTGCAGGGTGACTGGTGGCTTTG TTCAATCTTGGTTATCCTGGAGCATTGGCCAAGATTGATGGCTTGGTGTAATCCTGATTG TCCTGGAGCAGTATTGCGGTGAATGCAAGCTGACGGGTAGCTGTTTTAAGGCAATCTTGG CTGCTATTATGTGGATAGCTAGTTGGTGCAGAGTTACTTCTGCGATGTGATCATGGAGCT GGAATGCTGCACAACGTTCTTGTTGATAGTGGAACGGCTGTGCTACAGGTTCACCCAGTT ATGCCCTTTGCAAAAAAATTTGCTTCAAATTCTTCTACAAGGCAGTCTTTTGCATAGTTC AAATTGTTTACGATCATGTACAGGCCAATTTTCCTTCTTTGATGCTCGTAGGAAATGCCC AG