Transcript Data
Barley RTD
Links



Exon Structure of HORVU2Hr1G084930.41

ChromosomeExonStartStopDirection
chr2H1614349408614349332+
chr2H2614350161614350013+
chr2H3614350541614350292+
chr2H4614351269614351011+
chr2H5614351485614351389+
chr2H6614354845614354764+
chr2H7614355033614354977+
chr2H8614355353614355222+
chr2H9614355517614355431+
chr2H10614355844614355736+
chr2H11614356065614355929+
chr2H12614356910614356806+
chr2H13614357771614357683+
chr2H14614357971614357869+
chr2H15614358168614358046+
chr2H16614358861614358722+
chr2H17614359538614359050+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os04g41530.1 +3 0.0 555 264/318 (83%) protein|serine/threonine-protein kinase GCN2, putative, expressed
TAIR PP10 AT3G59410 @ ARAPORT
AT3G59410.1 @ TAIR		 +3 0.0 357 189/355 (53%) Symbols: GCN2 | protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1241
BRACH PP3 Bradi5g14307.1.p +3 0.0 658 324/354 (92%) pacid=32809296 transcript=Bradi5g14307.1 locus=Bradi5g14307 ID=Bradi5g14307.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2485 bp)

>HORVU2Hr1G084930.41 2485 150831_barley_pseudomolecules
CGCAGTGGTGAAGTCGTCCCCACTTGTGCCAAGAGGTCCTGGGTTCGAATGAGCCTCCTG
CATTGCACTTTGCAGGGCCAAATTTCTAAAGCTGGAGCAGCTGGATCATGACCAATATAT
TCCTACTGAAGGAATGGGCGTTTCAATGGATGGAACAGGTCAAGTAGGTACCTATTTTTA
TACTGCACCGGAGGTAGAACAGAAGTGGCCACAGATAAACGAAAAGGTTGACATGTACAG
TGCGGGTGTTATATTCTTTGAGCTTTGGCATCCATTTTCAACAGCAATGGAAAGACATCT
TGTTCTCACTGATCTTAAACAGAAAGGCGAGTCTCCAATATCATGGTCAACACAATTTCC
TGGTCAATCAAATCTATTAAGACGCTTGCTGTGTCCAAGCCCGTCCGAACGTCCATCTGC
GATTGAGCTTTTGCAAAATGACTTGCCTCCTCGGATGGAGGACGAGTGGTTAAATGATGT
ACTTAGAATGATACAGACACCAGAAGACACTTACGTTTATGATCGAGTTATATCTACAAT
ATTTAATGAAGATCGACTGGTCGCCAAAATGCAATGTCAGCATGAAAGCAGTAAAAAATC
CACTTATAAAAATGATAACAGTGAACTCTTGGATTCCATTATTGAGGTTAGCAAAGAGGT
TTTTAAGCGACATTGTGCTAAAAGGTTCCAGATAACACCCTTGCATACATTGGATGGGAA
ATTTACTGAAAATAGTGGAAAGACAGTGAAGATCCTAACGCAAGGAGGAGAGATGCTAGA
ACTTTGCTATGAGCTGCGAACACCATTTGTTATGAACGTTGCTGCTAACCAGTTATCATC
ATGTAAGCGTTATGAAATATCATGGGTTCACAGAAGAGCAGTTGGCCATTCAACTCCTTA
TCGTTTTCTTCAGGGGTGATTTTGACATCATTGGAGGTTCTTCACCAATAACACAGGCCG
AAGTTATCAAGGTAGCTTTGGACCTTGTGAGACGTTTTTACAATTCGAAGGCAATAGTTA
TTCGACTGAATCATAGCAAACTCGCTGAAGCAGTTTGTTCCTGGGCAGGAGTTCCTCAGG
AACGAAGACAGAATGTTGCTGAGTTTCTATCTTCTACTCTTGTTCAATATTGCCCAAACA
AGGCGGATCGTAAGTCACAGTGGAGTTTCATTCGAGGGCAACTATTACAGGATCTTCGTC
TTTCTGAAGAAGTTGTTGAAAAGCTACATAAAGCAGATCAGCGGTTTTGTGGATCTGCAG
ATCTAGTACTTGCTAGATTAAGAGGGACCTTTTTCTATGATAAATCTGCTTGCAAGGCTC
TTGATGATCTCTCCACATTCCTTAAATGTTTGAGGGTATGGTCAGTTGAAGAACATATTG
CTATTGATGTACTTATGCCTCCTTCAGACTATTACTACTCAGATATGTTTTTTCAGATCT
ACTCAAAAGAAGGCAGTCCTGCGTCGAGTTCCCATGAAAAGTTGCTTGCTGTTGGCGGGC
GATATGATATGTTGATGGAAAATGCTTGGGATAAGACACATAAAACCAAACCCCCGGGTG
CTGTTGGTGTGAGCATTGCACTTGAGAAATTCCTACCTAATAATCCTTCATCTGACGTTG
GGTTGCCAAGGATTGAAAATAGCATCAGTGTACTAGTCTGTTCAAAGGGCGGCGGCGGAC
TCTTAAACGAACGCATGGAACTTGTTGCAGAACTTTGGGAAGCTAACATAAAGGCCCAGT
TTGTTCCTCAGGAAGACCCAAGTCTTCAAGAACAATACGAGTACGCCAGTGATCATGACA
TCAAATGCCTTGTGTTTATCACTGAAGCAGGTCTTGCGCAAACTGATCTTGTGAAGGTTA
GACATCTCGATGCAAGAAAGGAGAAAGATGTTGAAAAGGAAGAAATTGTGAAGTTCCTGT
CTGAAGCAATATCTTTACAGTTCAAAAATCCTACAATCTGGAGCTGATTGGCAGTCTGCT
CCTAAGTGAATTTCAGGTGAAAGCAGTGTTGCCTTGCCAAACATTTTCACCTACACCAAA
TTGCAGGGTGACTGGTGGCTTTGTTCAATCTTGGTTATCCTGGAGCATTGGCCAAGATTG
ATGGCTTGGTGTAATCCTGATTGTCCTGGAGCAGTATTGCGGTGAATGCAAGCTGACGGG
TAGCTGTTTTAAGGCAATCTTGGCTGCTATTATGTGGATAGCTAGTTGGTGCAGAGTTAC
TTCTGCGATGTGATCATGGAGCTGGAATGCTGCACAACGTTCTTGTTGATAGTGGAACGG
CTGTGCTACAGGTTCACCCAGTTATGCCCTTTGCAAAAAAATTTGCTTCAAATTCTTCTA
CAAGGCAGTCTTTTGCATAGTTCAAATTGTTTACGATCATGTACAGGCCAATTTTCCTTC
TTTGATGCTCGTAGGAAATGCCCAGTTTTGCAACTGGCTTAGCTTGGAGAAGACAAGCCA
ATGCAGTTTTGCTACAATACCGGTC