Transcript Data
Barley RTD
Links



Exon Structure of HORVU2Hr1G084930.31

ChromosomeExonStartStopDirection
chr2H1614334067614333995+
chr2H2614334855614334784+
chr2H3614335005614334946+
chr2H4614335184614335079+
chr2H5614336189614336085+
chr2H6614337611614337144+
chr2H7614338348614338217+
chr2H8614338544614338458+
chr2H9614338728614338642+
chr2H10614338934614338838+
chr2H11614339597614339480+
chr2H12614348172614348118+
chr2H13614348432614348266+
chr2H14614349221614349034+
chr2H15614350161614350013+
chr2H16614350541614350292+
chr2H17614351269614351011+
chr2H18614351485614351389+
chr2H19614354845614354764+
chr2H20614355033614354977+
chr2H21614355353614355319+
chr2H22614355517614355431+
chr2H23614355844614355736+
chr2H24614356065614355929+
chr2H25614356910614356806+
chr2H26614357771614357683+
chr2H27614357971614357869+
chr2H28614358168614358046+
chr2H29614358861614358722+
chr2H30614359464614359050+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os04g41510.1 +3 0.0 1361 679/846 (80%) protein|serine/threonine-protein kinase GCN2, putative, expressed
TAIR PP10 AT3G59410 @ ARAPORT
AT3G59410.1 @ TAIR		 +3 0.0 1108 620/1252 (50%) Symbols: GCN2 | protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1241
BRACH PP3 Bradi5g14307.1.p +3 0.0 2117 1058/1234 (86%) pacid=32809296 transcript=Bradi5g14307.1 locus=Bradi5g14307 ID=Bradi5g14307.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (4052 bp)

>HORVU2Hr1G084930.31 4052 150831_barley_pseudomolecules
GCAAGGCGGCCAAGGACCACGCCGCGCAGCTCGAGGGCGACCAGACCGCGCTCACGGACG
AGCTCACGGCGCTGGCTGCAATTTTTCTTGAGGACTTCAAAATAACTTCACAATCACCTA
ACACCCGATTTAGCATATGTATCAGGCCTTACTCTGACGGCATGGGCTTTGGAGATTTAA
ATGTTTCGGCTATTCTTGATGTAATTTGCTTTGCTGGTTACCCCCACAAGTGCCCAAAGT
TGCGAATCATACCCGAGAAAAACTTGTCTAAAGAAGATGCTGATCGGTTACTTTCCCTTC
TTTCTGACCAGGCAAACATTTATTCCAGAGAAGGGCGTGTTATGATTTTCGATTTGGTAG
AGGCTGCCCAAGAATTCCTTTCAGAAATTGCTCCAGCTGCTGATTCATCAAGTACTGCTC
CTCACTTAGGTTCAAGTACAGTACAGGAAACAACTGATGCAGATGTGAAAGCTACCCTTG
ACAGCAGTCCTTACCCTGGAATCTTTTACATCTACAATTCATTCGATTTGTATAGTCAAC
TATATGATGATAATAGTTGGCAAAGGCAAGGTTTCGATCCTACAACTGATAATGCCAACA
AAAATATTGGATCTCAAGTCAATTCAAATGTTATAAGCAAGAGGAAAACAGTGAATGAAA
AATCCCGTTTTTCAGCTGATAAGGTCAATGCTGCAAAAAGTTCATCTCAGGATAATTCTG
AACAGCAGCATGCCATGAAGCTGGGTGTTGTACGGGAGGTAGTTCCAAGTTTACCTGTTG
TTGCAGAGGAAACTGATAATGACAGCAAAACTTTGTCCACAAGCAACGGAGGAGGTATGG
CAGATACTCCAGAGAGGAGTTTCAGCAGTGTACATGAATCCGAGGACTCTGGCCTTGCAG
ATGAAGGTTGGAATGATGAAGATTCTGCTCCAGACTCTGGCTCTTCAAATGCACCATCTC
ATGTTTCAGACATGTTTGATGATGCTTCGCAAAATAAGAAAAGGGATTTAATTCTGGTAC
ACTTGCTTCGGTTAGCCTGTGCGTCAAAAGATTCTCTTTCAGCTGCTTTGCCAGTAATAT
CATTGGAGTTATGCAACATAGGGGTTCTTTCTGAATGGGCTAAGCAATTAATTTCTGAAT
CTCCTGCTGTTTTTGGGGAAACTTTCGATCATGTTTTTGGGCAACAAATGATATCTTCGG
AGTGCTCTCTATTTTGGAGGGCTGACAATTCATCGTCTAGGCCAAACTCCCGTTATTTGA
ATGATTTTGAAGAGCTCCGTTCACTTGGTCAGGGGGGCTTTGGCCGTGTGGCATTGTGTA
AAAACAAGCTCGATGGACGCCAATATGCTGTAAAGAAGATACGCCTCAAGGATAGAAGTC
CTCAAGTGAATGAAAAGATTCTCAGAGAAGTTGCCACACTTTCACGACTGCAGCATCAGC
ATGTTGTTCGTTACTACCAGGCATGGGTTGAAACTGAATATGGTCAACATCATGTTGTGA
ACAGCGGGGGGTCACGCACTGCTGAGAGCTCTATGTATAGTTTCGACGAGATCAGCTTAT
CAGATGCAGGTGCTGGAAATAAGCAGGAATGCACGTACTTGTACATCCAAATGGAGTATT
GTCCTAGAACCCTGCGACAGGACTTTGAGACATATAGTTCATCTTTCAATGTCGACCATG
CATGGCACTTATTTCGACAAATCGTGGAAGGCCTAGCACATGTTCATAGTCAAGGCATCA
TACACCGGGACTTGACACCTAGCAACATATTTTTTGATGTGCGCAACGATATCAAAATTG
GAGATTTTGGTCTTGCCAAATTTCTAAAGCTGGAGCAGCTGGATCATGACCAATATATTC
CTACTGAAGGAATGGGCGTTTCAATGGATGGAACAGGTCAAGTAGGTACCTATTTTTATA
CTGCACCGGAGGTAGAACAGAAGTGGCCACAGATAAACGAAAAGGTTGACATGTACAGTG
CGGGTGTTATATTCTTTGAGCTTTGGCATCCATTTTCAACAGCAATGGAAAGACATCTTG
TTCTCACTGATCTTAAACAGAAAGGCGAGTCTCCAATATCATGGTCAACACAATTTCCTG
GTCAATCAAATCTATTAAGACGCTTGCTGTGTCCAAGCCCGTCCGAACGTCCATCTGCGA
TTGAGCTTTTGCAAAATGACTTGCCTCCTCGGATGGAGGACGAGTGGTTAAATGATGTAC
TTAGAATGATACAGACACCAGAAGACACTTACGTTTATGATCGAGTTATATCTACAATAT
TTAATGAAGATCGACTGGTCGCCAAAATGCAATGTCAGCATGAAAGCAGTAAAAAATCCA
CTTATAAAAATGATAACAGTGAACTCTTGGATTCCATTATTGAGGTTAGCAAAGAGGTTT
TTAAGCGACATTGTGCTAAAAGGTTCCAGATAACACCCTTGCATACATTGGATGGGAAAT
TTACTGAAAATAGTGGAAAGACAGTGAAGATCCTAACGCAAGGAGGAGAGATGCTAGAAC
TTTGCTATGAGCTGCGAACACCATTTGTTATGAACGTTGCTGCTAACCAGTTATCATCAT
GTAAGCGTTATGAAATATCATGGGTTCACAGAAGAGCAGTTGGCCATTCAACTCCTTATC
GTTTTCTTCAGGGGTGATTTTGACATCATTGGAGGTTCTTCACCAATAACACAGGCCGAA
GTTATCAAGGAGTTCCTCAGGAACGAAGACAGAATGTTGCTGAGTTTCTATCTTCTACTC
TTGTTCAATATTGCCCAAACAAGGCGGATCGTAAGTCACAGTGGAGTTTCATTCGAGGGC
AACTATTACAGGATCTTCGTCTTTCTGAAGAAGTTGTTGAAAAGCTACATAAAGCAGATC
AGCGGTTTTGTGGATCTGCAGATCTAGTACTTGCTAGATTAAGAGGGACCTTTTTCTATG
ATAAATCTGCTTGCAAGGCTCTTGATGATCTCTCCACATTCCTTAAATGTTTGAGGGTAT
GGTCAGTTGAAGAACATATTGCTATTGATGTACTTATGCCTCCTTCAGACTATTACTACT
CAGATATGTTTTTTCAGATCTACTCAAAAGAAGGCAGTCCTGCGTCGAGTTCCCATGAAA
AGTTGCTTGCTGTTGGCGGGCGATATGATATGTTGATGGAAAATGCTTGGGATAAGACAC
ATAAAACCAAACCCCCGGGTGCTGTTGGTGTGAGCATTGCACTTGAGAAATTCCTACCTA
ATAATCCTTCATCTGACGTTGGGTTGCCAAGGATTGAAAATAGCATCAGTGTACTAGTCT
GTTCAAAGGGCGGCGGCGGACTCTTAAACGAACGCATGGAACTTGTTGCAGAACTTTGGG
AAGCTAACATAAAGGCCCAGTTTGTTCCTCAGGAAGACCCAAGTCTTCAAGAACAATACG
AGTACGCCAGTGATCATGACATCAAATGCCTTGTGTTTATCACTGAAGCAGGTCTTGCGC
AAACTGATCTTGTGAAGGTTAGACATCTCGATGCAAGAAAGGAGAAAGATGTTGAAAAGG
AAGAAATTGTGAAGTTCCTGTCTGAAGCAATATCTTTACAGTTCAAAAATCCTACAATCT
GGAGCTGATTGGCAGTCTGCTCCTAAGTGAATTTCAGGTGAAAGCAGTGTTGCCTTGCCA
AACATTTTCACCTACACCAAATTGCAGGGTGACTGGTGGCTTTGTTCAATCTTGGTTATC
CTGGAGCATTGGCCAAGATTGATGGCTTGGTGTAATCCTGATTGTCCTGGAGCAGTATTG
CGGTGAATGCAAGCTGACGGGTAGCTGTTTTAAGGCAATCTTGGCTGCTATTATGTGGAT
AGCTAGTTGGTGCAGAGTTACTTCTGCGATGTGATCATGGAGCTGGAATGCTGCACAACG
TTCTTGTTGATAGTGGAACGGCTGTGCTACAGGTTCACCCAGTTATGCCCTTTGCAAAAA
AATTTGCTTCAAATTCTTCTACAAGGCAGTCTTTTGCATAGTTCAAATTGTTTACGATCA
TGTACAGGCCAATTTTCCTTCTTTGATGCTCG