Transcript Data
Barley RTD
Links



Exon Structure of HORVU2Hr1G084930.30

ChromosomeExonStartStopDirection
chr2H1614334067614333949+
chr2H2614334855614334784+
chr2H3614335005614334946+
chr2H4614335184614335079+
chr2H5614336189614336085+
chr2H6614337611614337144+
chr2H7614338348614338217+
chr2H8614338728614338642+
chr2H9614338934614338838+
chr2H10614339597614339480+
chr2H11614348172614348118+
chr2H12614348432614348266+
chr2H13614349221614349034+
chr2H14614350161614350013+
chr2H15614350541614350292+
chr2H16614351269614351011+
chr2H17614351485614351389+
chr2H18614354844614354764+
chr2H19614355033614354977+
chr2H20614355353614355222+
chr2H21614355517614355431+
chr2H22614355844614355736+
chr2H23614356065614355929+
chr2H24614356910614356806+
chr2H25614357771614357683+
chr2H26614357971614357869+
chr2H27614358168614358046+
chr2H28614358832614358722+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os04g41510.1 +1 0.0 1293 654/846 (77%) protein|serine/threonine-protein kinase GCN2, putative, expressed
TAIR PP10 AT3G59410 @ ARAPORT
AT3G59410.1 @ TAIR		 +1 0.0 1127 625/1247 (50%) Symbols: GCN2 | protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1241
BRACH PP3 Bradi5g14307.1.p +1 0.0 2157 1088/1250 (87%) pacid=32809296 transcript=Bradi5g14307.1 locus=Bradi5g14307 ID=Bradi5g14307.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (3663 bp)

>HORVU2Hr1G084930.30 3663 150831_barley_pseudomolecules
ATGGGGCACAGCGCGAGGAGGAAGAAGAAGAAGGGCGGCGCTGGGCGCAAGGCGGCCAAG
GACCACGCCGCGCAGCTCGAGGGCGACCAGACCGCGCTCACGGACGAGCTCACGGCGCTG
GCTGCAATTTTTCTTGAGGACTTCAAAATAACTTCACAATCACCTAACACCCGATTTAGC
ATATGTATCAGGCCTTACTCTGACGGCATGGGCTTTGGAGATTTAAATGTTTCGGCTATT
CTTGATGTAATTTGCTTTGCTGGTTACCCCCACAAGTGCCCAAAGTTGCGAATCATACCC
GAGAAAAACTTGTCTAAAGAAGATGCTGATCGGTTACTTTCCCTTCTTTCTGACCAGGCA
AACATTTATTCCAGAGAAGGGCGTGTTATGATTTTCGATTTGGTAGAGGCTGCCCAAGAA
TTCCTTTCAGAAATTGCTCCAGCTGCTGATTCATCAAGTACTGCTCCTCACTTAGGTTCA
AGTACAGTACAGGAAACAACTGATGCAGATGTGAAAGCTACCCTTGACAGCAGTCCTTAC
CCTGGAATCTTTTACATCTACAATTCATTCGATTTGTATAGTCAACTATATGATGATAAT
AGTTGGCAAAGGCAAGGTTTCGATCCTACAACTGATAATGCCAACAAAAATATTGGATCT
CAAGTCAATTCAAATGTTATAAGCAAGAGGAAAACAGTGAATGAAAAATCCCGTTTTTCA
GCTGATAAGGTCAATGCTGCAAAAAGTTCATCTCAGGATAATTCTGAACAGCAGCATGCC
ATGAAGCTGGGTGTTGTACGGGAGGTAGTTCCAAGTTTACCTGTTGTTGCAGAGGAAACT
GATAATGACAGCAAAACTTTGTCCACAAGCAACGGAGGAGGTATGGCAGATACTCCAGAG
AGGAGTTTCAGCAGTGTACATGAATCCGAGGACTCTGGCCTTGCAGATGAAGGTTGGAAT
GATGAAGATTCTGCTCCAGACTCTGGCTCTTCAAATGCACCATCTCATGTTTCAGACATG
TTTGATGATGCTTCGCAAAATAAGAAAAGGGATTTAATTCTGGTTCTTTCTGAATGGGCT
AAGCAATTAATTTCTGAATCTCCTGCTGTTTTTGGGGAAACTTTCGATCATGTTTTTGGG
CAACAAATGATATCTTCGGAGTGCTCTCTATTTTGGAGGGCTGACAATTCATCGTCTAGG
CCAAACTCCCGTTATTTGAATGATTTTGAAGAGCTCCGTTCACTTGGTCAGGGGGGCTTT
GGCCGTGTGGCATTGTGTAAAAACAAGCTCGATGGACGCCAATATGCTGTAAAGAAGATA
CGCCTCAAGGATAGAAGTCCTCAAGTGAATGAAAAGATTCTCAGAGAAGTTGCCACACTT
TCACGACTGCAGCATCAGCATGTTGTTCGTTACTACCAGGCATGGGTTGAAACTGAATAT
GGTCAACATCATGTTGTGAACAGCGGGGGGTCACGCACTGCTGAGAGCTCTATGTATAGT
TTCGACGAGATCAGCTTATCAGATGCAGGTGCTGGAAATAAGCAGGAATGCACGTACTTG
TACATCCAAATGGAGTATTGTCCTAGAACCCTGCGACAGGACTTTGAGACATATAGTTCA
TCTTTCAATGTCGACCATGCATGGCACTTATTTCGACAAATCGTGGAAGGCCTAGCACAT
GTTCATAGTCAAGGCATCATACACCGGGACTTGACACCTAGCAACATATTTTTTGATGTG
CGCAACGATATCAAAATTGGAGATTTTGGTCTTGCCAAATTTCTAAAGCTGGAGCAGCTG
GATCATGACCAATATATTCCTACTGAAGGAATGGGCGTTTCAATGGATGGAACAGGTCAA
GTAGGTACCTATTTTTATACTGCACCGGAGGTAGAACAGAAGTGGCCACAGATAAACGAA
AAGGTTGACATGTACAGTGCGGGTGTTATATTCTTTGAGCTTTGGCATCCATTTTCAACA
GCAATGGAAAGACATCTTGTTCTCACTGATCTTAAACAGAAAGGCGAGTCTCCAATATCA
TGGTCAACACAATTTCCTGGTCAATCAAATCTATTAAGACGCTTGCTGTGTCCAAGCCCG
TCCGAACGTCCATCTGCGATTGAGCTTTTGCAAAATGACTTGCCTCCTCGGATGGAGGAC
GAGTGGTTAAATGATGTACTTAGAATGATACAGACACCAGAAGACACTTACGTTTATGAT
CGAGTTATATCTACAATATTTAATGAAGATCGACTGGTCGCCAAAATGCAATGTCAGCAT
GAAAGCAGTAAAAAATCCACTTATAAAAATGATAACAGTGAACTCTTGGATTCCATTATT
GAGGTTAGCAAAGAGGTTTTTAAGCGACATTGTGCTAAAAGGTTCCAGATAACACCCTTG
CATACATTGGATGGGAAATTTACTGAAAATAGTGGAAAGACAGTGAAGATCCTAACGCAA
GGAGGAGAGATGCTAGAACTTTGCTATGAGCTGCGAACACCATTTGTTATGAACGTTGCT
GCTAACCAGTTATCATCATGTAAGCGTTATGAAATATCATGGGTTCACAGAAGAGCAGTT
GGCCATTCAACTCCTTATCGTTTTCTTCAGGGTGATTTTGACATCATTGGAGGTTCTTCA
CCAATAACACAGGCCGAAGTTATCAAGGTAGCTTTGGACCTTGTGAGACGTTTTTACAAT
TCGAAGGCAATAGTTATTCGACTGAATCATAGCAAACTCGCTGAAGCAGTTTGTTCCTGG
GCAGGAGTTCCTCAGGAACGAAGACAGAATGTTGCTGAGTTTCTATCTTCTACTCTTGTT
CAATATTGCCCAAACAAGGCGGATCGTAAGTCACAGTGGAGTTTCATTCGAGGGCAACTA
TTACAGGATCTTCGTCTTTCTGAAGAAGTTGTTGAAAAGCTACATAAAGCAGATCAGCGG
TTTTGTGGATCTGCAGATCTAGTACTTGCTAGATTAAGAGGGACCTTTTTCTATGATAAA
TCTGCTTGCAAGGCTCTTGATGATCTCTCCACATTCCTTAAATGTTTGAGGGTATGGTCA
GTTGAAGAACATATTGCTATTGATGTACTTATGCCTCCTTCAGACTATTACTACTCAGAT
ATGTTTTTTCAGATCTACTCAAAAGAAGGCAGTCCTGCGTCGAGTTCCCATGAAAAGTTG
CTTGCTGTTGGCGGGCGATATGATATGTTGATGGAAAATGCTTGGGATAAGACACATAAA
ACCAAACCCCCGGGTGCTGTTGGTGTGAGCATTGCACTTGAGAAATTCCTACCTAATAAT
CCTTCATCTGACGTTGGGTTGCCAAGGATTGAAAATAGCATCAGTGTACTAGTCTGTTCA
AAGGGCGGCGGCGGACTCTTAAACGAACGCATGGAACTTGTTGCAGAACTTTGGGAAGCT
AACATAAAGGCCCAGTTTGTTCCTCAGGAAGACCCAAGTCTTCAAGAACAATACGAGTAC
GCCAGTGATCATGACATCAAATGCCTTGTGTTTATCACTGAAGCAGGTCTTGCGCAAACT
GATCTTGTGAAGGTTAGACATCTCGATGCAAGAAAGGAGAAAGATGTTGAAAAGGAAGAA
ATTGTGAAGTTCCTGTCTGAAGCAATATCTTTACAGTTCAAAAATCCTACAATCTGGAGC
TGA