- Transcript HORVU2Hr1G084930.29
- Transcript IDHORVU2Hr1G084930.29
- Gene IDHORVU2Hr1G084930
Barley RTD
Exon Structure of HORVU2Hr1G084930.29
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 614334067 | 614333949 | + |
| chr2H | 2 | 614334855 | 614334784 | + |
| chr2H | 3 | 614335005 | 614334946 | + |
| chr2H | 4 | 614335184 | 614335079 | + |
| chr2H | 5 | 614336189 | 614336085 | + |
| chr2H | 6 | 614337611 | 614337144 | + |
| chr2H | 7 | 614338348 | 614338217 | + |
| chr2H | 8 | 614338544 | 614338458 | + |
| chr2H | 9 | 614338728 | 614338642 | + |
| chr2H | 10 | 614338934 | 614338838 | + |
| chr2H | 11 | 614339597 | 614339480 | + |
| chr2H | 12 | 614341434 | 614341407 | + |
| chr2H | 13 | 614342657 | 614342614 | + |
| chr2H | 14 | 614348172 | 614348110 | + |
| chr2H | 15 | 614348432 | 614348266 | + |
| chr2H | 16 | 614349221 | 614349034 | + |
| chr2H | 17 | 614350161 | 614350013 | + |
| chr2H | 18 | 614350541 | 614350292 | + |
| chr2H | 19 | 614351302 | 614351011 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g41510.1 | +3 | 0.0 | 698 | 326/367 (89%) | protein|serine/threonine-protein kinase GCN2, putative, expressed |
| TAIR PP10 | AT3G59410 @ ARAPORT AT3G59410.1 @ TAIR |
+3 | 5e-141 | 450 | 218/360 (61%) | Symbols: GCN2 | protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1241 |
| BRACH PP3 | Bradi5g14307.5.p | +1 | 0.0 | 770 | 417/493 (85%) | pacid=32809300 transcript=Bradi5g14307.5 locus=Bradi5g14307 ID=Bradi5g14307.5.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2632 bp)
>HORVU2Hr1G084930.29 2632 150831_barley_pseudomolecules ATGGGGCACAGCGCGAGGAGGAAGAAGAAGAAGGGCGGCGCTGGGCGCAAGGCGGCCAAG GACCACGCCGCGCAGCTCGAGGGCGACCAGACCGCGCTCACGGACGAGCTCACGGCGCTG GCTGCAATTTTTCTTGAGGACTTCAAAATAACTTCACAATCACCTAACACCCGATTTAGC ATATGTATCAGGCCTTACTCTGACGGCATGGGCTTTGGAGATTTAAATGTTTCGGCTATT CTTGATGTAATTTGCTTTGCTGGTTACCCCCACAAGTGCCCAAAGTTGCGAATCATACCC GAGAAAAACTTGTCTAAAGAAGATGCTGATCGGTTACTTTCCCTTCTTTCTGACCAGGCA AACATTTATTCCAGAGAAGGGCGTGTTATGATTTTCGATTTGGTAGAGGCTGCCCAAGAA TTCCTTTCAGAAATTGCTCCAGCTGCTGATTCATCAAGTACTGCTCCTCACTTAGGTTCA AGTACAGTACAGGAAACAACTGATGCAGATGTGAAAGCTACCCTTGACAGCAGTCCTTAC CCTGGAATCTTTTACATCTACAATTCATTCGATTTGTATAGTCAACTATATGATGATAAT AGTTGGCAAAGGCAAGGTTTCGATCCTACAACTGATAATGCCAACAAAAATATTGGATCT CAAGTCAATTCAAATGTTATAAGCAAGAGGAAAACAGTGAATGAAAAATCCCGTTTTTCA GCTGATAAGGTCAATGCTGCAAAAAGTTCATCTCAGGATAATTCTGAACAGCAGCATGCC ATGAAGCTGGGTGTTGTACGGGAGGTAGTTCCAAGTTTACCTGTTGTTGCAGAGGAAACT GATAATGACAGCAAAACTTTGTCCACAAGCAACGGAGGAGGTATGGCAGATACTCCAGAG AGGAGTTTCAGCAGTGTACATGAATCCGAGGACTCTGGCCTTGCAGATGAAGGTTGGAAT GATGAAGATTCTGCTCCAGACTCTGGCTCTTCAAATGCACCATCTCATGTTTCAGACATG TTTGATGATGCTTCGCAAAATAAGAAAAGGGATTTAATTCTGGTACACTTGCTTCGGTTA GCCTGTGCGTCAAAAGATTCTCTTTCAGCTGCTTTGCCAGTAATATCATTGGAGTTATGC AACATAGGGGTTCTTTCTGAATGGGCTAAGCAATTAATTTCTGAATCTCCTGCTGTTTTT GGGGAAACTTTCGATCATGTTTTTGGGCAACAAATGATATCTTCGGAGTGCTCTCTATTT TGGAGGGCTGACAATTCATCGTCTAGGCCAAACTCCCGTTATTTGAATGATTTTGAAGAG CTCCGTTCACTTGGTCAGGGGGGCTTTGGCCGTGTGGCATTGTGTAAAAACAAGCTCGAT GGACGCCAATATGCTGTAAAGAAGATACGCCTCAAGGATAGAAGTCCTCAAGTGAATGAA AAGATTCTCAGAAGACAAGTGTGCTTGCCTAGATTCAAGGTGTTCGAACAAGTGATGGCG ACACTGATGACTTTCTAATTAATGTATTCAGAGAAGTTGCCACACTTTCACGACTGCAGC ATCAGCATGTTGTTCGTTACTACCAGGCATGGGTTGAAACTGAATATGGTCAACATCATG TTGTGAACAGCGGGGGGTCACGCACTGCTGAGAGCTCTATGTATAGTTTCGACGAGATCA GCTTATCAGATGCAGGTGCTGGAAATAAGCAGGAATGCACGTACTTGTACATCCAAATGG AGTATTGTCCTAGAACCCTGCGACAGGACTTTGAGACATATAGTTCATCTTTCAATGTCG ACCATGCATGGCACTTATTTCGACAAATCGTGGAAGGCCTAGCACATGTTCATAGTCAAG GCATCATACACCGGGACTTGACACCTAGCAACATATTTTTTGATGTGCGCAACGATATCA AAATTGGAGATTTTGGTCTTGCCAAATTTCTAAAGCTGGAGCAGCTGGATCATGACCAAT ATATTCCTACTGAAGGAATGGGCGTTTCAATGGATGGAACAGGTCAAGTAGGTACCTATT TTTATACTGCACCGGAGGTAGAACAGAAGTGGCCACAGATAAACGAAAAGGTTGACATGT ACAGTGCGGGTGTTATATTCTTTGAGCTTTGGCATCCATTTTCAACAGCAATGGAAAGAC ATCTTGTTCTCACTGATCTTAAACAGAAAGGCGAGTCTCCAATATCATGGTCAACACAAT TTCCTGGTCAATCAAATCTATTAAGACGCTTGCTGTGTCCAAGCCCGTCCGAACGTCCAT CTGCGATTGAGCTTTTGCAAAATGACTTGCCTCCTCGGATGGAGGACGAGTGGTTAAATG ATGTACTTAGAATGATACAGACACCAGAAGACACTTACGTTTATGATCGAGTTATATCTA CAATATTTAATGAAGATCGACTGGTCGCCAAAATGCAATGTCAGCATGAAAGCAGTAAAA AATCCACTTATAAAAATGATAACAGTGAACTCTTGGATTCCATTATTGAGGTTAGCAAAG AGGTTTTTAAGCGACATTGTGCTAAAAGGTTCCAGATAACACCCTTGCATACATTGGATG GGAAATTTACTGAAAATAGGTGTGTTTGAATTCTAGTCCACTTACCTTATGA