- Transcript HORVU2Hr1G084930.23
- Transcript IDHORVU2Hr1G084930.23
- Gene IDHORVU2Hr1G084930
Barley RTD
Exon Structure of HORVU2Hr1G084930.23
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 614334067 | 614333609 | + |
| chr2H | 2 | 614334855 | 614334784 | + |
| chr2H | 3 | 614335184 | 614334946 | + |
| chr2H | 4 | 614336189 | 614336085 | + |
| chr2H | 5 | 614337611 | 614337144 | + |
| chr2H | 6 | 614338348 | 614338217 | + |
| chr2H | 7 | 614338544 | 614338458 | + |
| chr2H | 8 | 614338728 | 614338642 | + |
| chr2H | 9 | 614338937 | 614338838 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g41510.1 | +3 | 1e-175 | 520 | 270/362 (75%) | protein|serine/threonine-protein kinase GCN2, putative, expressed |
| TAIR PP10 | AT3G59410 @ ARAPORT AT3G59410.1 @ TAIR |
+3 | 6e-56 | 198 | 133/370 (36%) | Symbols: GCN2 | protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1241 |
| BRACH PP3 | Bradi5g14307.3.p | +3 | 0.0 | 586 | 301/361 (83%) | pacid=32809299 transcript=Bradi5g14307.3 locus=Bradi5g14307 ID=Bradi5g14307.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1749 bp)
>HORVU2Hr1G084930.23 1749 150831_barley_pseudomolecules GAGACACTGGGTGGCGGCTAGAGCAGAGCAGGGGAAGGGAACCGAAGCTAGTCGCAAAGG TCTCGCCGCCTCTGCGCTGACTGCATCGAGATAAACAGTCTGGACCCCGGTCACGACGCG CGCAGCCCCTTCCACTCCATCGCTCCATTCCACGTCAAAACCTCCTCCCCGGACTCGAGT CAGAGAAACCCAAACGCAGATCCCCTCCTCGTCAGATCATCCCTCCCGCACCCGGAACAT CCAATCCGATCAACCCCGTCTCCCCGAGGCACCAAATCGCCGCCGCCGCTGCAGCCACCC CCTCTTGTCCGGCGCTGCCTCCCGCGCGCGCTCCGCTCCGATGGGGCACAGCGCGAGGAG GAAGAAGAAGAAGGGCGGCGCTGGGCGCAAGGCGGCCAAGGACCACGCCGCGCAGCTCGA GGGCGACCAGACCGCGCTCACGGACGAGCTCACGGCGCTGGCTGCAATTTTTCTTGAGGA CTTCAAAATAACTTCACAATCACCTAACACCCGATTTAGCATATGTATCAGGCCTTACTC TGACGGCATGGGCTTTGGAGATTTAAATGTTTCGGCTATTCTTGATGTAATGTAAGTCTT TTTGTTTAAGAGACGTTTTGTGTGTTTTGCACTTGATGACATCTGTCTTTTGATTATAAT ACAGTTGCTTTGCTGGTTACCCCCACAAGTGCCCAAAGTTGCGAATCATACCCGAGAAAA ACTTGTCTAAAGAAGATGCTGATCGGTTACTTTCCCTTCTTTCTGACCAGGCAAACATTT ATTCCAGAGAAGGGCGTGTTATGATTTTCGATTTGGTAGAGGCTGCCCAAGAATTCCTTT CAGAAATTGCTCCAGCTGCTGATTCATCAAGTACTGCTCCTCACTTAGGTTCAAGTACAG TACAGGAAACAACTGATGCAGATGTGAAAGCTACCCTTGACAGCAGTCCTTACCCTGGAA TCTTTTACATCTACAATTCATTCGATTTGTATAGTCAACTATATGATGATAATAGTTGGC AAAGGCAAGGTTTCGATCCTACAACTGATAATGCCAACAAAAATATTGGATCTCAAGTCA ATTCAAATGTTATAAGCAAGAGGAAAACAGTGAATGAAAAATCCCGTTTTTCAGCTGATA AGGTCAATGCTGCAAAAAGTTCATCTCAGGATAATTCTGAACAGCAGCATGCCATGAAGC TGGGTGTTGTACGGGAGGTAGTTCCAAGTTTACCTGTTGTTGCAGAGGAAACTGATAATG ACAGCAAAACTTTGTCCACAAGCAACGGAGGAGGTATGGCAGATACTCCAGAGAGGAGTT TCAGCAGTGTACATGAATCCGAGGACTCTGGCCTTGCAGATGAAGGTTGGAATGATGAAG ATTCTGCTCCAGACTCTGGCTCTTCAAATGCACCATCTCATGTTTCAGACATGTTTGATG ATGCTTCGCAAAATAAGAAAAGGGATTTAATTCTGGTACACTTGCTTCGGTTAGCCTGTG CGTCAAAAGATTCTCTTTCAGCTGCTTTGCCAGTAATATCATTGGAGTTATGCAACATAG GGGTTCTTTCTGAATGGGCTAAGCAATTAATTTCTGAATCTCCTGCTGTTTTTGGGGAAA CTTTCGATCATGTTTTTGGGCAACAAATGATATCTTCGGAGTGCTCTCTATTTTGGAGGG CTGACAATTCATCGTCTAGGCCAAACTCCCGTTATTTGAATGATTTTGAAGAGCTCCGTT CACTTGGTG