- Transcript HORVU2Hr1G084930.1
- Transcript IDHORVU2Hr1G084930.1
- Gene IDHORVU2Hr1G084930
Barley RTD
Exon Structure of HORVU2Hr1G084930.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 614334067 | 614333564 | + |
| chr2H | 2 | 614334855 | 614334784 | + |
| chr2H | 3 | 614335005 | 614334946 | + |
| chr2H | 4 | 614335184 | 614335079 | + |
| chr2H | 5 | 614336189 | 614336085 | + |
| chr2H | 6 | 614337611 | 614337144 | + |
| chr2H | 7 | 614338348 | 614338217 | + |
| chr2H | 8 | 614338544 | 614338458 | + |
| chr2H | 9 | 614338728 | 614338642 | + |
| chr2H | 10 | 614338934 | 614338838 | + |
| chr2H | 11 | 614339597 | 614339480 | + |
| chr2H | 12 | 614348172 | 614348118 | + |
| chr2H | 13 | 614348432 | 614348266 | + |
| chr2H | 14 | 614349221 | 614349034 | + |
| chr2H | 15 | 614350161 | 614350013 | + |
| chr2H | 16 | 614350541 | 614350292 | + |
| chr2H | 17 | 614351269 | 614351011 | + |
| chr2H | 18 | 614351485 | 614351389 | + |
| chr2H | 19 | 614354844 | 614354764 | + |
| chr2H | 20 | 614355033 | 614354977 | + |
| chr2H | 21 | 614355353 | 614355319 | + |
| chr2H | 22 | 614355517 | 614355431 | + |
| chr2H | 23 | 614355844 | 614355736 | + |
| chr2H | 24 | 614356065 | 614355929 | + |
| chr2H | 25 | 614356910 | 614356806 | + |
| chr2H | 26 | 614357771 | 614357683 | + |
| chr2H | 27 | 614357971 | 614357869 | + |
| chr2H | 28 | 614358168 | 614358046 | + |
| chr2H | 29 | 614358861 | 614358722 | + |
| chr2H | 30 | 614359344 | 614359050 | + |
| chr2H | 31 | 614359587 | 614359440 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g41510.1 | +2 | 0.0 | 1359 | 679/846 (80%) | protein|serine/threonine-protein kinase GCN2, putative, expressed |
| TAIR PP10 | AT3G59410 @ ARAPORT AT3G59410.1 @ TAIR |
+2 | 0.0 | 842 | 462/913 (51%) | Symbols: GCN2 | protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1241 |
| BRACH PP3 | Bradi5g14307.5.p | +2 | 0.0 | 1610 | 810/918 (88%) | pacid=32809300 transcript=Bradi5g14307.5 locus=Bradi5g14307 ID=Bradi5g14307.5.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4510 bp)
>HORVU2Hr1G084930.1 4510 150831_barley_pseudomolecules GGAGAGAGAGAGAGGAGGGGGTGGCGGCGGTGTGGAGGAGACAGTGAGACACTGGGTGGC GGCTAGAGCAGAGCAGGGGAAGGGAACCGAAGCTAGTCGCAAAGGTCTCGCCGCCTCTGC GCTGACTGCATCGAGATAAACAGTCTGGACCCCGGTCACGACGCGCGCAGCCCCTTCCAC TCCATCGCTCCATTCCACGTCAAAACCTCCTCCCCGGACTCGAGTCAGAGAAACCCAAAC GCAGATCCCCTCCTCGTCAGATCATCCCTCCCGCACCCGGAACATCCAATCCGATCAACC CCGTCTCCCCGAGGCACCAAATCGCCGCCGCCGCTGCAGCCACCCCCTCTTGTCCGGCGC TGCCTCCCGCGCGCGCTCCGCTCCGATGGGGCACAGCGCGAGGAGGAAGAAGAAGAAGGG CGGCGCTGGGCGCAAGGCGGCCAAGGACCACGCCGCGCAGCTCGAGGGCGACCAGACCGC GCTCACGGACGAGCTCACGGCGCTGGCTGCAATTTTTCTTGAGGACTTCAAAATAACTTC ACAATCACCTAACACCCGATTTAGCATATGTATCAGGCCTTACTCTGACGGCATGGGCTT TGGAGATTTAAATGTTTCGGCTATTCTTGATGTAATTTGCTTTGCTGGTTACCCCCACAA GTGCCCAAAGTTGCGAATCATACCCGAGAAAAACTTGTCTAAAGAAGATGCTGATCGGTT ACTTTCCCTTCTTTCTGACCAGGCAAACATTTATTCCAGAGAAGGGCGTGTTATGATTTT CGATTTGGTAGAGGCTGCCCAAGAATTCCTTTCAGAAATTGCTCCAGCTGCTGATTCATC AAGTACTGCTCCTCACTTAGGTTCAAGTACAGTACAGGAAACAACTGATGCAGATGTGAA AGCTACCCTTGACAGCAGTCCTTACCCTGGAATCTTTTACATCTACAATTCATTCGATTT GTATAGTCAACTATATGATGATAATAGTTGGCAAAGGCAAGGTTTCGATCCTACAACTGA TAATGCCAACAAAAATATTGGATCTCAAGTCAATTCAAATGTTATAAGCAAGAGGAAAAC AGTGAATGAAAAATCCCGTTTTTCAGCTGATAAGGTCAATGCTGCAAAAAGTTCATCTCA GGATAATTCTGAACAGCAGCATGCCATGAAGCTGGGTGTTGTACGGGAGGTAGTTCCAAG TTTACCTGTTGTTGCAGAGGAAACTGATAATGACAGCAAAACTTTGTCCACAAGCAACGG AGGAGGTATGGCAGATACTCCAGAGAGGAGTTTCAGCAGTGTACATGAATCCGAGGACTC TGGCCTTGCAGATGAAGGTTGGAATGATGAAGATTCTGCTCCAGACTCTGGCTCTTCAAA TGCACCATCTCATGTTTCAGACATGTTTGATGATGCTTCGCAAAATAAGAAAAGGGATTT AATTCTGGTACACTTGCTTCGGTTAGCCTGTGCGTCAAAAGATTCTCTTTCAGCTGCTTT GCCAGTAATATCATTGGAGTTATGCAACATAGGGGTTCTTTCTGAATGGGCTAAGCAATT AATTTCTGAATCTCCTGCTGTTTTTGGGGAAACTTTCGATCATGTTTTTGGGCAACAAAT GATATCTTCGGAGTGCTCTCTATTTTGGAGGGCTGACAATTCATCGTCTAGGCCAAACTC CCGTTATTTGAATGATTTTGAAGAGCTCCGTTCACTTGGTCAGGGGGGCTTTGGCCGTGT GGCATTGTGTAAAAACAAGCTCGATGGACGCCAATATGCTGTAAAGAAGATACGCCTCAA GGATAGAAGTCCTCAAGTGAATGAAAAGATTCTCAGAGAAGTTGCCACACTTTCACGACT GCAGCATCAGCATGTTGTTCGTTACTACCAGGCATGGGTTGAAACTGAATATGGTCAACA TCATGTTGTGAACAGCGGGGGGTCACGCACTGCTGAGAGCTCTATGTATAGTTTCGACGA GATCAGCTTATCAGATGCAGGTGCTGGAAATAAGCAGGAATGCACGTACTTGTACATCCA AATGGAGTATTGTCCTAGAACCCTGCGACAGGACTTTGAGACATATAGTTCATCTTTCAA TGTCGACCATGCATGGCACTTATTTCGACAAATCGTGGAAGGCCTAGCACATGTTCATAG TCAAGGCATCATACACCGGGACTTGACACCTAGCAACATATTTTTTGATGTGCGCAACGA TATCAAAATTGGAGATTTTGGTCTTGCCAAATTTCTAAAGCTGGAGCAGCTGGATCATGA CCAATATATTCCTACTGAAGGAATGGGCGTTTCAATGGATGGAACAGGTCAAGTAGGTAC CTATTTTTATACTGCACCGGAGGTAGAACAGAAGTGGCCACAGATAAACGAAAAGGTTGA CATGTACAGTGCGGGTGTTATATTCTTTGAGCTTTGGCATCCATTTTCAACAGCAATGGA AAGACATCTTGTTCTCACTGATCTTAAACAGAAAGGCGAGTCTCCAATATCATGGTCAAC ACAATTTCCTGGTCAATCAAATCTATTAAGACGCTTGCTGTGTCCAAGCCCGTCCGAACG TCCATCTGCGATTGAGCTTTTGCAAAATGACTTGCCTCCTCGGATGGAGGACGAGTGGTT AAATGATGTACTTAGAATGATACAGACACCAGAAGACACTTACGTTTATGATCGAGTTAT ATCTACAATATTTAATGAAGATCGACTGGTCGCCAAAATGCAATGTCAGCATGAAAGCAG TAAAAAATCCACTTATAAAAATGATAACAGTGAACTCTTGGATTCCATTATTGAGGTTAG CAAAGAGGTTTTTAAGCGACATTGTGCTAAAAGGTTCCAGATAACACCCTTGCATACATT GGATGGGAAATTTACTGAAAATAGTGGAAAGACAGTGAAGATCCTAACGCAAGGAGGAGA GATGCTAGAACTTTGCTATGAGCTGCGAACACCATTTGTTATGAACGTTGCTGCTAACCA GTTATCATCATGTAAGCGTTATGAAATATCATGGGTTCACAGAAGAGCAGTTGGCCATTC AACTCCTTATCGTTTTCTTCAGGGTGATTTTGACATCATTGGAGGTTCTTCACCAATAAC ACAGGCCGAAGTTATCAAGGAGTTCCTCAGGAACGAAGACAGAATGTTGCTGAGTTTCTA TCTTCTACTCTTGTTCAATATTGCCCAAACAAGGCGGATCGTAAGTCACAGTGGAGTTTC ATTCGAGGGCAACTATTACAGGATCTTCGTCTTTCTGAAGAAGTTGTTGAAAAGCTACAT AAAGCAGATCAGCGGTTTTGTGGATCTGCAGATCTAGTACTTGCTAGATTAAGAGGGACC TTTTTCTATGATAAATCTGCTTGCAAGGCTCTTGATGATCTCTCCACATTCCTTAAATGT TTGAGGGTATGGTCAGTTGAAGAACATATTGCTATTGATGTACTTATGCCTCCTTCAGAC TATTACTACTCAGATATGTTTTTTCAGATCTACTCAAAAGAAGGCAGTCCTGCGTCGAGT TCCCATGAAAAGTTGCTTGCTGTTGGCGGGCGATATGATATGTTGATGGAAAATGCTTGG GATAAGACACATAAAACCAAACCCCCGGGTGCTGTTGGTGTGAGCATTGCACTTGAGAAA TTCCTACCTAATAATCCTTCATCTGACGTTGGGTTGCCAAGGATTGAAAATAGCATCAGT GTACTAGTCTGTTCAAAGGGCGGCGGCGGACTCTTAAACGAACGCATGGAACTTGTTGCA GAACTTTGGGAAGCTAACATAAAGGCCCAGTTTGTTCCTCAGGAAGACCCAAGTCTTCAA GAACAATACGAGTACGCCAGTGATCATGACATCAAATGCCTTGTGTTTATCACTGAAGCA GGTCTTGCGCAAACTGATCTTGTGAAGGTTAGACATCTCGATGCAAGAAAGGAGAAAGAT GTTGAAAAGGAAGAAATTGTGAAGTTCCTGTCTGAAGCAATATCTTTACAGTTCAAAAAT CCTACAATCTGGAGCTGATTGGCAGTCTGCTCCTAAGTGAATTTCAGGTGAAAGCAGTGT TGCCTTGCCAAACATTTTCACCTACACCAAATTGCAGGGTGACTGGTGGCTTTGTTCAAT CTTGGTTATCCTGGAGCATTGGCCAAGATTGATGGCTTGGTGTAATCCTGATTGTCCTGG AGCAGTATTGCGGTGAATGCAAGCTGACGGGTAGCTGTTTTAAGGCAATCTTGGCTGCTA TTATGTGGATAGCTAGTTGGTGCAGAGTTACTTCTGCGATGTGATCATGGAGCTGGAATG CTGCACAACGTTCTTGTTGATAGTGGAACGGCTGTGCTACAGGCCAATTTTCCTTCTTTG ATGCTCGTAGGAAATGCCCAGTTTTGCAACTGGCTTAGCTTGGAGAAGACAAGCCAATGC AGTTTTGCTACAATACCGGTCAAAGTAGAATGTATGTAATCTGTTATCTGTGCACAGTGC GAAAGAGCAT