- Transcript HORVU2Hr1G077560.4
- Transcript IDHORVU2Hr1G077560.4
- Gene IDHORVU2Hr1G077560
Barley RTD
Exon Structure of HORVU2Hr1G077560.4
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 560837559 | 560836777 | - |
| chr2H | 2 | 560839277 | 560838664 | - |
| chr2H | 3 | 560840111 | 560839880 | - |
| chr2H | 4 | 560841176 | 560840973 | - |
| chr2H | 5 | 560841423 | 560841263 | - |
| chr2H | 6 | 560841657 | 560841505 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g36660.1 | +3 | 0.0 | 688 | 365/452 (81%) | protein|calmodulin binding protein, putative, expressed |
| TAIR PP10 | AT5G57580 @ ARAPORT AT5G57580.1 @ TAIR |
+3 | 3e-127 | 392 | 226/454 (50%) | Symbols: | Calmodulin-binding protein | chr5:23314994-23317683 REVERSE LENGTH=647 |
| BRACH PP3 | Bradi3g46060.2.p | +3 | 0.0 | 613 | 324/454 (71%) | pacid=32814594 transcript=Bradi3g46060.2 locus=Bradi3g46060 ID=Bradi3g46060.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2147 bp)
>HORVU2Hr1G077560.4 2147 150831_barley_pseudomolecules CCATAGGAGAGCTTATCTTCACTGACAATTCCAGCTGGATAAGGAGCAGAAAATTCAGAC TTGGGATGAGAGTCTCTTCAGGATTTTGTGACGGAGTTCGTATCAAAGAGGCGAAGACAG AGGCTTTTACTGTGAAAGATCACAGAGGAGAATTGTACAAGAAACATTACCCTCCTGCGC TTAAGGATGATGTTTGGAGACTGGAAAAGATTGGAAAGGACGGTGCATTCCACGGGAAAC TAAACTCAAACGGAATCTATACAGTTGAACATTTTCTTCAACTTCTTGTTAAAGATCAAC AGAAGTTAAGAAGTATCCTTGGTACTGGCATGTCAAATAAGATGTGGGAAAGTCTTGTTG AACATGCAAAAACTTGTGTTCTGAGTGGCAAACATTATATATATTACTCGAAGGATACAG CAAGTGTTGGTGCAATATTCAATAACATATATGAGTTCACTGGTTTGATTGCTGATGATC AGTTTATTTCAACGGAAAATCTTACTGAAAACCAGAGGGTGTTTGCGGATACGTTGGTGA AGCAAGCATACGATGATTGGATCAATGTTGTAGAATATGATGGCAAGGGATTGTTGAAAT TTAAGCAGAAAAAGAAATCTGTCACAACAAGAAGTGATGTTGCAAATGTCTCTACAAGCT ACACTTCTTATGATTCAGCGCACTCTCAGAAACAATTGGCACGAGGACATGCCAATATTG AGCGATCTCTCATGAGCAGTACGACTAAAGACGAGACAAGAATTGCATCCAACGGGAATC AAGTAGCAATATATGAAGCCAATCCTCAGGACATTTCACCAAGTATTACCATGCAATATG GCATGAGTTCATTGATCCCTGAAGGCCAGTTCAATGGCTCTTCCATCCAAACTCAAGCAT CAAGAAGCTCCAACATGCTAGCATTTGGACCTCCACCACAGCAGCCGCATAACTTCGAAT TCTCAGCATTTGGTCTGTCCATGCAATCCCCAGCTCCTAATCCTTTTGATGACTGGCCTG GACGGTTGCAGGAGAACCGCGGTGGTGTTGATGACTGTCTGATGGAGGAGATAAGAGGGA GAAGCCATGACATGCTGGAGAATGAAGAAGAGATGCAACATATGCTGCGCATTCTTAGCG GCGGGGCAGCAGCAAACATGAATAATGTAGGTGGCTTTCCCTCCTACCCTTCTCCTGTAC CGGACTTCAACTTCGTGGATGATCGTGCTCCCTCATCCGGTAAGGCTGTTGTTGGGTGGC TTAAGATTAAGGCTGCCATGCGGTGGGGCATCTTCGTCAGGAAGAAAGCAGCTGAGAGAA GAGCTCAGCTTGTTGAGCTGGATGACTAGGGGATACGGATGTTGGTCAATTTTGTCTCAT ATTTTTCTCTCTCTCACGGTCTGTGCTGCTCACGGAGTTGGCAAAATACCCAATACCGGT CACTGATGATCTTCTGGATGAGCTACAAGGTTATACTGTGTATTCAACAATCATTTTTCA ATTCGCACATTGATTCACCAATCCTGGAACTCGCTATGGATAGAGAGTCCGTAGAATAGA AAGTAGGATGACGAGAGAAGAGTGAGGAGTACCGGAAACGAAGATTTTGGGCTTTGTGCC GACGAAGAAATAGTAGCATTTGAAACTGAAAAGATTTACTTTGTATAATAAATCTCCATG GAAGGGCTATAATCCAAACAAAGGAGCTAGCGGACGGTTAGAATTTCAGACTTTCAGTGA TTAGGGAGGGGAATGAAACACTTGGCTTTCACAATCAATTCTTTTTTTTAATGTTTAGGA CACGCGAAGTGAGCAAAACTCGCTATGAGGAGAAGACTCGGCAAGAGAGGTTTGAACAAG AGGAACTCTTCACCAAGCAAACCATGGAATGATAAATTTTAAGAGTCTACTAACCATCTT AATATCATCAACGGTCATTAAAAAGCAGGCCTTCGGGCATCTGTGTTCTGCAGCAAAAAG GAGTCAACATATTTCTGTTCAAAGAAGTTTCAGTCATACTATCTACATGCATTTTTGTGC ATCACCATCAGTGTATATCAAAATATGCACAAAGCAAGAATTGTTATCTATATTTATTAT TATTAGTTGTAGACTTGTAACATAGGTACTGGACAACTAATCATCGG