- Gene HORVU2Hr1G077560
- Gene IDHORVU2Hr1G077560
- Location chr2H: 560836733 - 560844700
Barley RTD
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| BART1_0-u12609 | 97.3 | - | - | 7968 | -218 | Containing |
Transcripts from Gene HORVU2Hr1G077560
| Transcript | Length(bp) | Description |
|---|---|---|
| HORVU2Hr1G077560.1 | 2523 | gene=HORVU2Hr1G077560 CDS=151-2115 |
| HORVU2Hr1G077560.2 | 2567 | gene=HORVU2Hr1G077560 CDS=234-2201 |
| HORVU2Hr1G077560.3 | 2567 | gene=HORVU2Hr1G077560 CDS=234-2201 |
| HORVU2Hr1G077560.4 | 2147 | gene=HORVU2Hr1G077560 CDS=3-1349 |
| HORVU2Hr1G077560.5 | 2561 | gene=HORVU2Hr1G077560 CDS=296-2266 |
| HORVU2Hr1G077560.6 | 2474 | gene=HORVU2Hr1G077560 CDS=958-2244 |
| HORVU2Hr1G077560.7 | 2427 | gene=HORVU2Hr1G077560 CDS=1290-2309 |
| HORVU2Hr1G077560.8 | 2315 | gene=HORVU2Hr1G077560 CDS=1247-2269 |
| HORVU2Hr1G077560.9 | 2267 | gene=HORVU2Hr1G077560 CDS=903-2186 |
| HORVU2Hr1G077560.10 | 2268 | gene=HORVU2Hr1G077560 CDS=220-2187 |
| HORVU2Hr1G077560.11 | 2239 | gene=HORVU2Hr1G077560 CDS=913-2199 |
| HORVU2Hr1G077560.12 | 1777 | gene=HORVU2Hr1G077560 CDS=3-1196 |
| HORVU2Hr1G077560.13 | 2906 | gene=HORVU2Hr1G077560 CDS=1303-2325 |
| HORVU2Hr1G077560.14 | 2689 | gene=HORVU2Hr1G077560 CDS=1329-2348 |
| HORVU2Hr1G077560.15 | 2690 | gene=HORVU2Hr1G077560 CDS=1327-2349 |
| HORVU2Hr1G077560.16 | 2479 | gene=HORVU2Hr1G077560 CDS=903-2189 |
| HORVU2Hr1G077560.17 | 2375 | gene=HORVU2Hr1G077560 CDS=912-2195 |
| HORVU2Hr1G077560.18 | 2469 | gene=HORVU2Hr1G077560 CDS=904-2187 |
| HORVU2Hr1G077560.19 | 2650 | gene=HORVU2Hr1G077560 CDS=406-2373 |
| HORVU2Hr1G077560.20 | 2647 | gene=HORVU2Hr1G077560 CDS=406-2370 |
| HORVU2Hr1G077560.21 | 2311 | gene=HORVU2Hr1G077560 CDS=97-2061 |
| HORVU2Hr1G077560.22 | 2416 | gene=HORVU2Hr1G077560 CDS=200-2167 |
| HORVU2Hr1G077560.23 | 2536 | gene=HORVU2Hr1G077560 CDS=1276-2295 |
| HORVU2Hr1G077560.24 | 2542 | gene=HORVU2Hr1G077560 CDS=1279-2301 |
| HORVU2Hr1G077560.25 | 2363 | gene=HORVU2Hr1G077560 CDS=164-2128 |
| HORVU2Hr1G077560.26 | 2366 | gene=HORVU2Hr1G077560 CDS=164-2131 |
| HORVU2Hr1G077560.27 | 2498 | gene=HORVU2Hr1G077560 CDS=978-2264 |
| HORVU2Hr1G077560.28 | 2183 | gene=HORVU2Hr1G077560 CDS=676-1962 |
| HORVU2Hr1G077560.29 | 2218 | gene=HORVU2Hr1G077560 CDS=813-2099 |
| HORVU2Hr1G077560.30 | 1822 | gene=HORVU2Hr1G077560 CDS=536-1822 |
| HORVU2Hr1G077560.31 | 1787 | gene=HORVU2Hr1G077560 CDS=1-1224 |
| HORVU2Hr1G077560.32 | 1781 | gene=HORVU2Hr1G077560 CDS=1-1353 |
| HORVU2Hr1G077560.33 | 1827 | gene=HORVU2Hr1G077560 CDS=1-1827 |
| HORVU2Hr1G077560.34 | 2073 | gene=HORVU2Hr1G077560 CDS=894-2072 |
| HORVU2Hr1G077560.35 | 1928 | gene=HORVU2Hr1G077560 CDS=899-1927 |
Exon Structure of HORVU2Hr1G077560
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g35470.1 | +2 | 0.0 | 468 | 261/311 (84%) | protein|calmodulin binding protein, putative, expressed |
| TAIR PP10 | AT2G18750 @ ARAPORT AT2G18750.3 @ TAIR |
+2 | 8e-170 | 417 | 227/312 (73%) | Symbols: | Calmodulin-binding protein | chr2:8125827-8128363 FORWARD LENGTH=622 |
| BRACH PP3 | Bradi3g46060.2.p | +2 | 0.0 | 483 | 267/311 (86%) | pacid=32814594 transcript=Bradi3g46060.2 locus=Bradi3g46060 ID=Bradi3g46060.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons