- Transcript HORVU2Hr1G077560.27
- Transcript IDHORVU2Hr1G077560.27
- Gene IDHORVU2Hr1G077560
Barley RTD
Exon Structure of HORVU2Hr1G077560.27
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 560839280 | 560838445 | - |
| chr2H | 2 | 560840111 | 560839880 | - |
| chr2H | 3 | 560841176 | 560840973 | - |
| chr2H | 4 | 560841423 | 560841263 | - |
| chr2H | 5 | 560841998 | 560841505 | - |
| chr2H | 6 | 560842181 | 560842111 | - |
| chr2H | 7 | 560842352 | 560842272 | - |
| chr2H | 8 | 560844230 | 560844063 | - |
| chr2H | 9 | 560844586 | 560844336 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g36660.1 | +3 | 0.0 | 877 | 488/591 (83%) | protein|calmodulin binding protein, putative, expressed |
| TAIR PP10 | AT2G18750 @ ARAPORT AT2G18750.3 @ TAIR |
+3 | 0.0 | 558 | 325/598 (54%) | Symbols: | Calmodulin-binding protein | chr2:8125827-8128363 FORWARD LENGTH=622 |
| BRACH PP3 | Bradi3g46060.1.p | +3 | 0.0 | 803 | 446/593 (75%) | pacid=32814592 transcript=Bradi3g46060.1 locus=Bradi3g46060 ID=Bradi3g46060.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2498 bp)
>HORVU2Hr1G077560.27 2498 150831_barley_pseudomolecules GACGGCGCGCGCGGTTGTTGGCGCCTCGTACGCGAGCCAAAACGAGTAAACAAAGCAAAG GCAAAGGCGGGCGCCACCTCCACCCACGCCACACATAGATCTCTCTCTCTCTCCCTCCAT CTCTTGCTTTGCCTCTAGTCGTCGCCCAGTCGCTGCCGCACTGCTCCGGCTCGAGCTCGA CGCGGGAAGGAGCAGCCCGGGCCTTCTCCAACCCTCGTGCCGCTATCGTTTGCCAGTTAC TAGTTGCTAAGATCTGACCCACGGCGCCGGCAAGGTTGTGGCGCCGCGGAGATGCAGAGG CAGGGGCGCCACATGGAGCGGTCTGGCTCCAAGCGGGCGCTAGACCCTGGCGGCAGTGGC GGAGGCGGCGGCGACGACGAACGTGATCCTAAACGGCCGCGCGTCCCGGCCCTCGCCAGT GTCATTGTAGAAGCTCTCAAGTTGGACAGTTTGCAGAAGCTTTGTTCATCCCTGGAGCCG ATTCTCCGAAGAGTTGTGAGGTCAGCGAAGAAGTAGAGCGTGCTTTAGCCAAATTGGGAC CTGCAGCAGCACCTGCTAGAATTGAAGGAAGGACCTCTCCCAAAAGAATTGAGGGCCCCA ATGGTAGTAACCTCCAGCTTCAGTTTCGGAGTAGGTTAGCACTCCCACTCTTTACTGGAG GAAAAGTGGAAGGCGAGCAGGGAGCATCAATACATGTTGTGCTGTTAGATGCAAACACTG GACATGTCGTCACTTCAGGACCCCAGTCATCTGCGAAACTGGATGTTCTTGTTCTCGAGG GTGATTTTAATAAAGAGAAGGACGAGGATTGGACTGAAGAAGAATTTGAGAGCCACATTG TGAAAGAACGTGAAGGGAAGAGGCCTCTTTTAAACGGTGATATCCATGTGACACTTAAAG AAGGCGTAGGGACCATAGGAGAGCTTATCTTCACTGACAATTCCAGCTGGATAAGGAGCA GAAAATTCAGACTTGGGATGAGAGTCTCTTCAGGATTTTGTGACGGAGTTCGTATCAAAG AGGCGAAGACAGAGGCTTTTACTGTGAAAGATCACAGAGGAGAATTGTACAAGAAACATT ACCCTCCTGCGCTTAAGGATGATGTTTGGAGACTGGAAAAGATTGGAAAGGACGGTGCAT TCCACGGGAAACTAAACTCAAACGGAATCTATACAGTTGAACATTTTCTTCAACTTCTTG TTAAAGATCAACAGAAGTTAAGAAGTATCCTTGGTACTGGCATGTCAAATAAGATGTGGG AAAGTCTTGTTGAACATGCAAAAACTTGTGTTCTGAGTGGCAAACATTATATATATTACT CGAAGGATACAGCAAGTGTTGGTGCAATATTCAATAACATATATGAGTTCACTGGTTTGA TTGCTGATGATCAGTTTATTTCAACGGAAAATCTTACTGAAAACCAGAGGGTGTTTGCGG ATACGTTGGTGAAGCAAGCATACGATGATTGGATCAATGTTGTAGAATATGATGGCAAGG GATTGTTGAAATTTAAGCAGAAAAAGAAATCTGTCACAACAAGAAGTGATGTTGCAAATG TCTCTACAAGCTACACTTCTTATGATTCAGCGCACTCTCAGAAACAATTGGCACGAGGAC ATGCCAATATTGAGCGATCTCTCATGAGCAGTACGACTAAAGCAGACGAGACAAGAATTG CATCCAACGGGAATCAAGTAGCAATATATGAAGCCAATCCTCAGGACATTTCACCAAGTA TTACCATGCAATATGGCATGAGTTCATTGATCCCTGAAGGCCAGTTCAATGGCTCTTCCA TCCAAACTCAAGCATCAAGAAGCTCCAACATGCTAGCATTTGGACCTCCACCACAGCAGC CGCATAACTTCGAATTCTCAGCATTTGGTCTGTCCATGCAATCCCCAGCTCCTAATCCTT TTGATGACTGGCCTGGACGGTTGCAGGAGAACCGCGGTGGTGTTGATGACTGTCTGATGG AGGAGATAAGAGGGAGAAGCCATGACATGCTGGAGAATGAAGAAGAGATGCAACATATGC TGCGCATTCTTAGCGGCGGGGCAGCAGCAAACATGAATAATGTAGGTGGCTTTCCCTCCT ACCCTTCTCCTGTACCGGACTTCAACTTCGTGGATGATCGTGCTCCCTCATCCGGTAAGG CTGTTGTTGGGTGGCTTAAGATTAAGGCTGCCATGCGGTGGGGCATCTTCGTCAGGAAGA AAGCAGCTGAGAGAAGAGCTCAGCTTGTTGAGCTGGATGACTAGGGGATACGGATGTTGG TAAGACACTTGTTTTTCTCGTCTTGTATAATTGCTTTGTTGACGCAATTATAGTCAGGAT CTCAAGCTCCAAAAGTATGAATGGACTCACGTTGGTTGTATAGGTAGCTGTTTGATGGTC ATTATCTAAGTTTTGTTGGTGTTCAGAAAAACAAAACTGCTACAACATTGGCCTCTACTG TGCAAACTTATTTGTTGGAGATTGGACACTTGAAACAG