- Transcript HORVU2Hr1G077560.20
- Transcript IDHORVU2Hr1G077560.20
- Gene IDHORVU2Hr1G077560
Barley RTD
Exon Structure of HORVU2Hr1G077560.20
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 560839277 | 560838402 | - |
| chr2H | 2 | 560840111 | 560839880 | - |
| chr2H | 3 | 560841176 | 560840973 | - |
| chr2H | 4 | 560841423 | 560841263 | - |
| chr2H | 5 | 560841998 | 560841505 | - |
| chr2H | 6 | 560842181 | 560842111 | - |
| chr2H | 7 | 560842352 | 560842277 | - |
| chr2H | 8 | 560844230 | 560844063 | - |
| chr2H | 9 | 560844700 | 560844336 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g36660.1 | +1 | 0.0 | 978 | 546/658 (83%) | protein|calmodulin binding protein, putative, expressed |
| TAIR PP10 | AT2G18750 @ ARAPORT AT2G18750.3 @ TAIR |
+1 | 0.0 | 619 | 365/666 (55%) | Symbols: | Calmodulin-binding protein | chr2:8125827-8128363 FORWARD LENGTH=622 |
| BRACH PP3 | Bradi3g46060.2.p | +1 | 0.0 | 895 | 501/660 (76%) | pacid=32814594 transcript=Bradi3g46060.2 locus=Bradi3g46060 ID=Bradi3g46060.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2647 bp)
>HORVU2Hr1G077560.20 2647 150831_barley_pseudomolecules GCCGGGATAGCCGCCACGGCTCTGAGCACCCTCCGGTCTCCAACCTACCCACCACACCCA CAGACAGGCGGTCCCGGTTGCCGATGCCCCACTTGTCATCCAGGTTACCTGACTGACGGC GCGCGCGGTTGTTGGCGCCTCGTACGCGAGCCAAAACGAGTAAACAAAGCAAAGGCAAAG GCGGGCGCCACCTCCACCCACGCCACACATAGATCTCTCTCTCTCTCCCTCCATCTCTTG CTTTGCCTCTAGTCGTCGCCCAGTCGCTGCCGCACTGCTCCGGCTCGAGCTCGACGCGGG AAGGAGCAGCCCGGGCCTTCTCCAACCCTCGTGCCGCTATCGTTTGCCAGTTACTAGTTG CTAAGATCTGACCCACGGCGCCGGCAAGGTTGTGGCGCCGCGGAGATGCAGAGGCAGGGG CGCCACATGGAGCGGTCTGGCTCCAAGCGGGCGCTAGACCCTGGCGGCAGTGGCGGAGGC GGCGGCGACGACGAACGTGATCCTAAACGGCCGCGCGTCCCGGCCCTCGCCAGTGTCATT GTAGAAGCTCTCAAGTTGGACAGTTTGCAGAAGCTTTGTTCATCCCTGGAGCCGATTCTC CGAAGAGTTGTCAGCGAAGAAGTAGAGCGTGCTTTAGCCAAATTGGGACCTGCAGCAGCA CCTGCTAGAATTGAAGGAAGGACCTCTCCCAAAAGAATTGAGGGCCCCAATGGTAGTAAC CTCCAGCTTCAGTTTCGGAGTAGGTTAGCACTCCCACTCTTTACTGGAGGAAAAGTGGAA GGCGAGCAGGGAGCATCAATACATGTTGTGCTGTTAGATGCAAACACTGGACATGTCGTC ACTTCAGGACCCCAGTCATCTGCGAAACTGGATGTTCTTGTTCTCGAGGGTGATTTTAAT AAAGAGAAGGACGAGGATTGGACTGAAGAAGAATTTGAGAGCCACATTGTGAAAGAACGT GAAGGGAAGAGGCCTCTTTTAAACGGTGATATCCATGTGACACTTAAAGAAGGCGTAGGG ACCATAGGAGAGCTTATCTTCACTGACAATTCCAGCTGGATAAGGAGCAGAAAATTCAGA CTTGGGATGAGAGTCTCTTCAGGATTTTGTGACGGAGTTCGTATCAAAGAGGCGAAGACA GAGGCTTTTACTGTGAAAGATCACAGAGGAGAATTGTACAAGAAACATTACCCTCCTGCG CTTAAGGATGATGTTTGGAGACTGGAAAAGATTGGAAAGGACGGTGCATTCCACGGGAAA CTAAACTCAAACGGAATCTATACAGTTGAACATTTTCTTCAACTTCTTGTTAAAGATCAA CAGAAGTTAAGAAGTATCCTTGGTACTGGCATGTCAAATAAGATGTGGGAAAGTCTTGTT GAACATGCAAAAACTTGTGTTCTGAGTGGCAAACATTATATATATTACTCGAAGGATACA GCAAGTGTTGGTGCAATATTCAATAACATATATGAGTTCACTGGTTTGATTGCTGATGAT CAGTTTATTTCAACGGAAAATCTTACTGAAAACCAGAGGGTGTTTGCGGATACGTTGGTG AAGCAAGCATACGATGATTGGATCAATGTTGTAGAATATGATGGCAAGGGATTGTTGAAA TTTAAGCAGAAAAAGAAATCTGTCACAACAAGAAGTGATGTTGCAAATGTCTCTACAAGC TACACTTCTTATGATTCAGCGCACTCTCAGAAACAATTGGCACGAGGACATGCCAATATT GAGCGATCTCTCATGAGCAGTACGACTAAAGACGAGACAAGAATTGCATCCAACGGGAAT CAAGTAGCAATATATGAAGCCAATCCTCAGGACATTTCACCAAGTATTACCATGCAATAT GGCATGAGTTCATTGATCCCTGAAGGCCAGTTCAATGGCTCTTCCATCCAAACTCAAGCA TCAAGAAGCTCCAACATGCTAGCATTTGGACCTCCACCACAGCAGCCGCATAACTTCGAA TTCTCAGCATTTGGTCTGTCCATGCAATCCCCAGCTCCTAATCCTTTTGATGACTGGCCT GGACGGTTGCAGGAGAACCGCGGTGGTGTTGATGACTGTCTGATGGAGGAGATAAGAGGG AGAAGCCATGACATGCTGGAGAATGAAGAAGAGATGCAACATATGCTGCGCATTCTTAGC GGCGGGGCAGCAGCAAACATGAATAATGTAGGTGGCTTTCCCTCCTACCCTTCTCCTGTA CCGGACTTCAACTTCGTGGATGATCGTGCTCCCTCATCCGGTAAGGCTGTTGTTGGGTGG CTTAAGATTAAGGCTGCCATGCGGTGGGGCATCTTCGTCAGGAAGAAAGCAGCTGAGAGA AGAGCTCAGCTTGTTGAGCTGGATGACTAGGGGATACGGATGTTGGTAAGACACTTGTTT TTCTCGTCTTGTATAATTGCTTTGTTGACGCAATTATAGTCAGGATCTCAAGCTCCAAAA GTATGAATGGACTCACGTTGGTTGTATAGGTAGCTGTTTGATGGTCATTATCTAAGTTTT GTTGGTGTTCAGAAAAACAAAACTGCTACAACATTGGCCTCTACTGTGCAAACTTATTTG TTGGAGATTGGACACTTGAAACAGGCTTTTTTTATGGGAACTAGCAGGTGATCTGCTTTT GCATTAA