Transcript Data
Barley RTD
Links



Exon Structure of HORVU2Hr1G077560.15

ChromosomeExonStartStopDirection
chr2H1560839280560838338-
chr2H2560840111560839880-
chr2H3560841423560840973-
chr2H4560841998560841505-
chr2H5560842181560842111-
chr2H6560842352560842277-
chr2H7560844230560844063-
chr2H8560844590560844336-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os02g35470.1 +2 0.0 468 261/311 (84%) protein|calmodulin binding protein, putative, expressed
TAIR PP10 AT2G18750 @ ARAPORT
AT2G18750.3 @ TAIR		 +2 8e-170 417 227/312 (73%) Symbols: | Calmodulin-binding protein | chr2:8125827-8128363 FORWARD LENGTH=622
BRACH PP3 Bradi3g46060.2.p +2 0.0 483 267/311 (86%) pacid=32814594 transcript=Bradi3g46060.2 locus=Bradi3g46060 ID=Bradi3g46060.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2690 bp)

>HORVU2Hr1G077560.15 2690 150831_barley_pseudomolecules
GACTGACGGCGCGCGCGGTTGTTGGCGCCTCGTACGCGAGCCAAAACGAGTAAACAAAGC
AAAGGCAAAGGCGGGCGCCACCTCCACCCACGCCACACATAGATCTCTCTCTCTCTCCCT
CCATCTCTTGCTTTGCCTCTAGTCGTCGCCCAGTCGCTGCCGCACTGCTCCGGCTCGAGC
TCGACGCGGGAAGGAGCAGCCCGGGCCTTCTCCAACCCTCGTGCCGCTATCGTTTGCCAG
TTACTAGTTGCTAAGATCTGACCCACGGCGCCGGCAAGGTTGTGGCGCCGCGGAGATGCA
GAGGCAGGGGCGCCACATGGAGCGGTCTGGCTCCAAGCGGGCGCTAGACCCTGGCGGCAG
TGGCGGAGGCGGCGGCGACGACGAACGTGATCCTAAACGGCCGCGCGTCCCGGCCCTCGC
CAGTGTCATTGTAGAAGCTCTCAAGTTGGACAGTTTGCAGAAGCTTTGTTCATCCCTGGA
GCCGATTCTCCGAAGAGTTGTCAGCGAAGAAGTAGAGCGTGCTTTAGCCAAATTGGGACC
TGCAGCAGCACCTGCTAGAATTGAAGGAAGGACCTCTCCCAAAAGAATTGAGGGCCCCAA
TGGTAGTAACCTCCAGCTTCAGTTTCGGAGTAGGTTAGCACTCCCACTCTTTACTGGAGG
AAAAGTGGAAGGCGAGCAGGGAGCATCAATACATGTTGTGCTGTTAGATGCAAACACTGG
ACATGTCGTCACTTCAGGACCCCAGTCATCTGCGAAACTGGATGTTCTTGTTCTCGAGGG
TGATTTTAATAAAGAGAAGGACGAGGATTGGACTGAAGAAGAATTTGAGAGCCACATTGT
GAAAGAACGTGAAGGGAAGAGGCCTCTTTTAAACGGTGATATCCATGTGACACTTAAAGA
AGGCGTAGGGACCATAGGAGAGCTTATCTTCACTGACAATTCCAGCTGGATAAGGAGCAG
AAAATTCAGACTTGGGATGAGAGTCTCTTCAGGATTTTGTGACGGAGTTCGTATCAAAGA
GGCGAAGACAGAGGCTTTTACTGTGAAAGATCACAGAGGAGAATTGTACAAGAAACATTA
CCCTCCTGCGCTTAAGGATGATGTTTGGAGACTGGAAAAGATTGGAAAGGACGGTGCATT
CCACGGGAAACTAAACTCAAACGGAATCTATACAGTTGAACATTTTCTTCAACTTCTTGT
TAAAGATCAACAGAAGTTAAGAAGTGTAAGTCGTACTATTTCTCGACTTTTGAGTTGTAA
ACCTTGCTAGTTCGTAGCAAAACATGAGCTTCTTCTATTGGCCTTTTGCAGATCCTTGGT
ACTGGCATGTCAAATAAGATGTGGGAAAGTCTTGTTGAACATGCAAAAACTTGTGTTCTG
AGTGGCAAACATTATATATATTACTCGAAGGATACAGCAAGTGTTGGTGCAATATTCAAT
AACATATATGAGTTCACTGGTTTGATTGCTGATGATCAGTTTATTTCAACGGAAAATCTT
ACTGAAAACCAGAGGGTGTTTGCGGATACGTTGGTGAAGCAAGCATACGATGATTGGATC
AATGTTGTAGAATATGATGGCAAGGGATTGTTGAAATTTAAGCAGAAAAAGAAATCTGTC
ACAACAAGAAGTGATGTTGCAAATGTCTCTACAAGCTACACTTCTTATGATTCAGCGCAC
TCTCAGAAACAATTGGCACGAGGACATGCCAATATTGAGCGATCTCTCATGAGCAGTACG
ACTAAAGCAGACGAGACAAGAATTGCATCCAACGGGAATCAAGTAGCAATATATGAAGCC
AATCCTCAGGACATTTCACCAAGTATTACCATGCAATATGGCATGAGTTCATTGATCCCT
GAAGGCCAGTTCAATGGCTCTTCCATCCAAACTCAAGCATCAAGAAGCTCCAACATGCTA
GCATTTGGACCTCCACCACAGCAGCCGCATAACTTCGAATTCTCAGCATTTGGTCTGTCC
ATGCAATCCCCAGCTCCTAATCCTTTTGATGACTGGCCTGGACGGTTGCAGGAGAACCGC
GGTGGTGTTGATGACTGTCTGATGGAGGAGATAAGAGGGAGAAGCCATGACATGCTGGAG
AATGAAGAAGAGATGCAACATATGCTGCGCATTCTTAGCGGCGGGGCAGCAGCAAACATG
AATAATGTAGGTGGCTTTCCCTCCTACCCTTCTCCTGTACCGGACTTCAACTTCGTGGAT
GATCGTGCTCCCTCATCCGGTAAGGCTGTTGTTGGGTGGCTTAAGATTAAGGCTGCCATG
CGGTGGGGCATCTTCGTCAGGAAGAAAGCAGCTGAGAGAAGAGCTCAGCTTGTTGAGCTG
GATGACTAGGGGATACGGATGTTGGTAAGACACTTGTTTTTCTCGTCTTGTATAATTGCT
TTGTTGACGCAATTATAGTCAGGATCTCAAGCTCCAAAAGTATGAATGGACTCACGTTGG
TTGTATAGGTAGCTGTTTGATGGTCATTATCTAAGTTTTGTTGGTGTTCAGAAAAACAAA
ACTGCTACAACATTGGCCTCTACTGTGCAAACTTATTTGTTGGAGATTGGACACTTGAAA
CAGGCTTTTTTTATGGGAACTAGCAGGTGATCTGCTTTTGCATTAAATGGGCAAATGAGT
TACTCCCTCCATCACAGTTTATAAGGCGTGCACGTGTATCTAGGTCGTCA